Variant report

Variant	rs3783406
Chromosome Location	chr14:104134339-104134340
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:104134068..104136390-chr14:104140972..104143359,2	MCF-7	breast:
2	chr14:104028061..104030482-chr14:104133206..104136158,2	K562	blood:
3	chr14:104126094..104128424-chr14:104132869..104136068,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126214	Chromatin interaction
ENSG00000256053	Chromatin interaction
ENSG00000166170	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11848174	0.84[ASN][1000 genomes]
rs11849022	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17101760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17101763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17101767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2024668	0.84[ASN][1000 genomes]
rs2274265	1.00[ASN][1000 genomes]
rs3212031	0.92[ASN][1000 genomes]
rs3212041	1.00[EUR][1000 genomes]
rs3212049	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3212052	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3212056	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3212058	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3212064	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3212066	1.00[EUR][1000 genomes]
rs3212071	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3212072	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3212078	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3212086	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3212096	1.00[EUR][1000 genomes]
rs3212099	1.00[EUR][1000 genomes]
rs3212106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3212112	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3212117	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3212121	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3212133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34100926	0.92[ASN][1000 genomes]
rs35905888	0.84[ASN][1000 genomes]
rs3736911	1.00[ASN][1000 genomes]
rs3742362	1.00[ASN][1000 genomes]
rs3742368	0.84[ASN][1000 genomes]
rs3742460	0.92[ASN][1000 genomes]
rs3742461	0.92[ASN][1000 genomes]
rs3742464	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3783405	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55650682	0.92[ASN][1000 genomes]
rs55653926	0.83[AFR][1000 genomes]
rs55729369	0.93[AFR][1000 genomes]
rs55958706	0.92[ASN][1000 genomes]
rs56726433	0.84[ASN][1000 genomes]
rs58899741	0.84[ASN][1000 genomes]
rs58909811	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74085289	0.84[ASN][1000 genomes]
rs74086597	0.84[ASN][1000 genomes]
rs74088714	0.84[ASN][1000 genomes]
rs8009618	0.84[ASN][1000 genomes]
rs8020907	0.84[ASN][1000 genomes]
rs8021384	0.84[ASN][1000 genomes]
rs9282879	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
2	nsv902300	chr14:103967504-104205811	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv1052010	chr14:104061472-104216267	Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv542201	chr14:104061472-104216267	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv456435	chr14:104061646-104198251	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
6	nsv566023	chr14:104061646-104198251	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
7	nsv902308	chr14:104087209-104211180	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv1041329	chr14:104097750-104196346	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
9	nsv542202	chr14:104097750-104196346	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
10	nsv1048866	chr14:104100862-104195896	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
11	nsv542203	chr14:104113463-104143782	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104097400-104156600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:104117800-104157000	Strong transcription	Dnd41	blood
3	chr14:104117800-104176000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr14:104118800-104175600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr14:104119200-104145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr14:104119200-104155600	Strong transcription	Primary T helper cells PMA-I stimulated	--
7	chr14:104119200-104173000	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr14:104119400-104145000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:104119400-104147800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr14:104119400-104157000	Strong transcription	Fetal Thymus	thymus
11	chr14:104119400-104161800	Strong transcription	Fetal Intestine Small	intestine
12	chr14:104119400-104164600	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr14:104119400-104175200	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr14:104120000-104145600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr14:104120000-104177000	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr14:104120200-104149800	Strong transcription	Fetal Muscle Leg	muscle
17	chr14:104120200-104155000	Strong transcription	Fetal Brain Female	brain
18	chr14:104120200-104161400	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr14:104120200-104161800	Strong transcription	Fetal Intestine Large	intestine
20	chr14:104120400-104134800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr14:104120400-104150000	Strong transcription	Fetal Muscle Trunk	muscle
22	chr14:104120400-104157000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr14:104120400-104157000	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr14:104120400-104161200	Strong transcription	Fetal Stomach	stomach
25	chr14:104120600-104143200	Strong transcription	Left Ventricle	heart
26	chr14:104120600-104155000	Strong transcription	Brain Germinal Matrix	brain
27	chr14:104120800-104157200	Strong transcription	Thymus	Thymus
28	chr14:104121000-104154200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr14:104121000-104154800	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr14:104121000-104162000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:104122800-104153000	Strong transcription	Liver	Liver
32	chr14:104123400-104144600	Strong transcription	Primary B cells from peripheral blood	blood
33	chr14:104123400-104155200	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr14:104124600-104147800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr14:104124600-104169800	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr14:104124600-104169800	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr14:104125200-104155400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr14:104125400-104135400	Strong transcription	Lung	lung
39	chr14:104126400-104140800	Weak transcription	Stomach Mucosa	stomach
40	chr14:104126600-104136000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr14:104128000-104138400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr14:104128800-104134400	Weak transcription	K562	blood
43	chr14:104128800-104135800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr14:104129000-104136000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr14:104129200-104138200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr14:104129200-104142400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr14:104130200-104136400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr14:104130200-104136600	Weak transcription	Pancreas	Pancrea
49	chr14:104130200-104143000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr14:104130400-104136000	Weak transcription	Ovary	ovary

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