Variant report

Variant	rs74088714
Chromosome Location	chr14:104273796-104273797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:104273581..104275158-chr14:104312487..104314939,2	MCF-7	breast:
2	chr14:104272756..104274930-chr14:104362407..104364169,2	K562	blood:
3	chr14:104272328..104275733-chr14:104376448..104378285,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258735	Chromatin interaction
ENSG00000088808	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11845983	1.00[EUR][1000 genomes]
rs11848174	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849022	0.84[ASN][1000 genomes]
rs17101760	0.84[ASN][1000 genomes]
rs17101763	0.84[ASN][1000 genomes]
rs17101767	0.84[ASN][1000 genomes]
rs2024668	1.00[ASN][1000 genomes]
rs2274265	0.84[ASN][1000 genomes]
rs3212031	0.92[ASN][1000 genomes]
rs3212049	0.92[ASN][1000 genomes]
rs3212056	0.92[ASN][1000 genomes]
rs3212058	0.92[ASN][1000 genomes]
rs3212064	0.92[ASN][1000 genomes]
rs3212071	0.92[ASN][1000 genomes]
rs3212078	0.92[ASN][1000 genomes]
rs3212086	0.92[ASN][1000 genomes]
rs3212106	0.92[ASN][1000 genomes]
rs3212112	0.92[ASN][1000 genomes]
rs3212117	0.92[ASN][1000 genomes]
rs3212121	0.92[ASN][1000 genomes]
rs3212133	0.84[ASN][1000 genomes]
rs34100926	0.92[ASN][1000 genomes]
rs35905888	1.00[ASN][1000 genomes]
rs3736911	0.84[ASN][1000 genomes]
rs3742362	0.84[ASN][1000 genomes]
rs3742368	1.00[ASN][1000 genomes]
rs3742464	0.84[ASN][1000 genomes]
rs3783406	0.84[ASN][1000 genomes]
rs55650682	0.92[ASN][1000 genomes]
rs55958706	0.92[ASN][1000 genomes]
rs56064032	1.00[EUR][1000 genomes]
rs56726433	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58899741	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58909811	0.84[ASN][1000 genomes]
rs6576001	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73350554	1.00[EUR][1000 genomes]
rs73350559	1.00[EUR][1000 genomes]
rs73350560	1.00[EUR][1000 genomes]
rs73350561	1.00[EUR][1000 genomes]
rs73350562	1.00[EUR][1000 genomes]
rs73350566	1.00[EUR][1000 genomes]
rs74085289	1.00[ASN][1000 genomes]
rs74086586	1.00[EUR][1000 genomes]
rs74086597	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006755	1.00[EUR][1000 genomes]
rs8009618	1.00[ASN][1000 genomes]
rs8011745	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8018770	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8020907	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8021384	1.00[ASN][1000 genomes]
rs9282879	0.92[ASN][1000 genomes]
rs9707589	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
2	nsv1045162	chr14:104140525-104594841	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542204	chr14:104140525-104594841	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	esv2758368	chr14:104147525-104412813	Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2760013	chr14:104147525-104412813	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv902313	chr14:104162263-104378087	Bivalent Enhancer Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
7	nsv902318	chr14:104255083-104464809	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
8	nsv902319	chr14:104255083-104620077	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	64 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104218400-104277800	Weak transcription	Spleen	Spleen
2	chr14:104241000-104274400	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:104257800-104284000	Weak transcription	Gastric	stomach
4	chr14:104258800-104274800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr14:104262600-104277200	Weak transcription	Pancreas	Pancrea
6	chr14:104263000-104277400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr14:104263200-104281800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:104263600-104274600	Weak transcription	Liver	Liver
9	chr14:104263800-104275800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr14:104268600-104285600	Weak transcription	Lung	lung
11	chr14:104270200-104273800	Enhancers	Fetal Heart	heart
12	chr14:104271000-104285600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:104272000-104273800	Flanking Active TSS	GM12878-XiMat	blood
14	chr14:104272600-104274000	Enhancers	Left Ventricle	heart
15	chr14:104273600-104275400	Weak transcription	Stomach Mucosa	stomach
16	chr14:104273600-104284800	Weak transcription	Right Ventricle	heart

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