Variant report

Variant	rs73350562
Chromosome Location	chr14:104333711-104333712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:104320014..104324951-chr14:104331915..104336985,8	MCF-7	breast:
2	chr14:104322796..104324811-chr14:104333710..104335450,2	K562	blood:
3	chr14:104330031..104331593-chr14:104332707..104335169,2	MCF-7	breast:
4	chr14:104332802..104335861-chr14:104354361..104356131,3	MCF-7	breast:
5	chr14:104332785..104335222-chr14:104358563..104360147,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11845983	1.00[EUR][1000 genomes]
rs11848174	1.00[EUR][1000 genomes]
rs56064032	1.00[EUR][1000 genomes]
rs56726433	1.00[EUR][1000 genomes]
rs58899741	1.00[EUR][1000 genomes]
rs6576001	1.00[EUR][1000 genomes]
rs73350554	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73350559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73350560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73350561	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73350566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74086586	1.00[EUR][1000 genomes]
rs74086597	1.00[EUR][1000 genomes]
rs74088714	1.00[EUR][1000 genomes]
rs8006755	1.00[EUR][1000 genomes]
rs8011745	1.00[EUR][1000 genomes]
rs8018770	1.00[EUR][1000 genomes]
rs8020907	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045162	chr14:104140525-104594841	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542204	chr14:104140525-104594841	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	esv2758368	chr14:104147525-104412813	Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2760013	chr14:104147525-104412813	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv902313	chr14:104162263-104378087	Bivalent Enhancer Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	nsv902318	chr14:104255083-104464809	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv902319	chr14:104255083-104620077	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	64 gene(s)	inside rSNPs	diseases
8	esv1838047	chr14:104283104-104359121	Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	nsv902321	chr14:104283104-104378087	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	esv1818596	chr14:104312697-104359121	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
11	esv1836134	chr14:104312697-104359121	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
12	nsv1053305	chr14:104326137-104372608	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv542205	chr14:104326137-104372608	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
14	nsv542206	chr14:104326137-104377507	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	nsv1042792	chr14:104326137-104384260	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
16	nsv542207	chr14:104326137-104384260	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104323600-104336000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:104323600-104337600	Weak transcription	Fetal Intestine Small	intestine
3	chr14:104326600-104336400	Weak transcription	Right Atrium	heart
4	chr14:104328200-104333800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:104328200-104336000	Weak transcription	Spleen	Spleen
6	chr14:104329200-104333800	Weak transcription	Liver	Liver
7	chr14:104329400-104338000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr14:104332200-104337200	Enhancers	Pancreas	Pancrea
9	chr14:104332600-104334200	Weak transcription	Lung	lung
10	chr14:104332800-104334400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:104333200-104337200	Enhancers	Right Ventricle	heart
12	chr14:104333400-104333800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:104333400-104334000	Enhancers	Stomach Smooth Muscle	stomach
14	chr14:104333400-104334200	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr14:104333400-104335200	Enhancers	Gastric	stomach
16	chr14:104333400-104337200	Enhancers	Esophagus	oesophagus
17	chr14:104333600-104333800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr14:104333600-104333800	Flanking Active TSS	Rectal Smooth Muscle	rectum
19	chr14:104333600-104334200	Enhancers	NHEK	skin
20	chr14:104333600-104334400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr14:104333600-104334400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr14:104333600-104334400	Enhancers	Brain Anterior Caudate	brain
23	chr14:104333600-104334600	Enhancers	Brain Substantia Nigra	brain
24	chr14:104333600-104334600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr14:104333600-104334600	Enhancers	Fetal Muscle Leg	muscle
26	chr14:104333600-104334600	Enhancers	Fetal Stomach	stomach
27	chr14:104333600-104334600	Enhancers	Left Ventricle	heart
28	chr14:104333600-104334600	Enhancers	Hela-S3	cervix
29	chr14:104333600-104334600	Flanking Active TSS	HepG2	liver
30	chr14:104333600-104334800	Enhancers	Fetal Heart	heart
31	chr14:104333600-104334800	Enhancers	Stomach Mucosa	stomach
32	chr14:104333600-104335000	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr14:104333600-104335400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr14:104333600-104335600	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr14:104333600-104335600	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links