Variant report

Variant	rs3783975
Chromosome Location	chr14:78310842-78310843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10137794	0.87[EUR][1000 genomes]
rs10151830	1.00[CHB][hapmap]
rs10483887	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11159296	1.00[ASN][1000 genomes]
rs11627983	1.00[AFR][1000 genomes]
rs11628161	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs12433276	1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs12433306	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs17106419	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17106425	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17106489	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17106503	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17106513	1.00[CHB][hapmap]
rs17106514	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17106518	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17106524	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17106532	1.00[CHB][hapmap]
rs17106537	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17106552	1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs17106556	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs17106561	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17106579	1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17106585	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17106593	1.00[AFR][1000 genomes]
rs2287647	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2287649	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2364740	1.00[CHB][hapmap]
rs2886169	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3783956	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3783958	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3783963	1.00[CHB][hapmap]
rs3783965	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3825690	1.00[CHB][hapmap]
rs56056525	0.88[ASN][1000 genomes]
rs57241351	0.88[ASN][1000 genomes]
rs61166317	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61975814	1.00[AFR][1000 genomes]
rs61990723	1.00[ASN][1000 genomes]
rs6574403	0.80[EUR][1000 genomes]
rs7140153	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7156202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs8008106	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs874024	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs874434	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043788	chr14:78178490-78381190	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78274800-78316600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:78283600-78311000	Weak transcription	Hela-S3	cervix
3	chr14:78284200-78312600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr14:78289600-78311600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr14:78293400-78331800	Weak transcription	Pancreas	Pancrea
6	chr14:78297600-78311200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:78297600-78324000	Weak transcription	Ovary	ovary
8	chr14:78297600-78336600	Weak transcription	Left Ventricle	heart
9	chr14:78297800-78311000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:78297800-78311200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr14:78297800-78353600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr14:78298200-78311000	Weak transcription	Fetal Intestine Large	intestine
13	chr14:78298200-78311200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr14:78299000-78325200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr14:78300000-78325400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr14:78301200-78325200	Weak transcription	Fetal Muscle Leg	muscle
17	chr14:78301400-78315400	Weak transcription	Fetal Intestine Small	intestine
18	chr14:78301400-78325200	Weak transcription	Gastric	stomach
19	chr14:78301400-78325400	Weak transcription	Lung	lung
20	chr14:78301400-78342200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr14:78302200-78323200	Weak transcription	Right Ventricle	heart
22	chr14:78302200-78331000	Weak transcription	Liver	Liver
23	chr14:78303000-78311200	Weak transcription	Adipose Nuclei	Adipose
24	chr14:78303000-78321200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr14:78306000-78326400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr14:78306000-78328800	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr14:78306000-78331800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr14:78306000-78356400	Weak transcription	Thymus	Thymus
29	chr14:78306600-78330400	Weak transcription	Dnd41	blood
30	chr14:78310000-78325200	Weak transcription	Brain Substantia Nigra	brain
31	chr14:78310000-78339400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr14:78310400-78311000	Strong transcription	Fetal Stomach	stomach
33	chr14:78310400-78313000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr14:78310400-78345000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr14:78310600-78311600	Strong transcription	Primary T cells from cord blood	blood
36	chr14:78310800-78311000	Enhancers	Esophagus	oesophagus

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