Variant report

Variant	rs3784566
Chromosome Location	chr15:44774122-44774123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12591178	1.00[YRI][hapmap]
rs12592995	1.00[YRI][hapmap]
rs16964045	0.89[JPT][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs2288340	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs2412884	1.00[EUR][1000 genomes]
rs2556561	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3752690	0.88[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3752691	0.88[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3784567	0.85[YRI][hapmap]
rs3816928	0.85[YRI][hapmap]
rs3986143	0.85[YRI][hapmap]
rs4283209	1.00[EUR][1000 genomes]
rs57400480	0.82[AMR][1000 genomes]
rs57451506	1.00[EUR][1000 genomes]
rs57618952	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60337896	0.82[AMR][1000 genomes]
rs8023453	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	esv3410956	chr15:44425145-44823647	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv904177	chr15:44582886-44821843	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv569299	chr15:44598642-44776075	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv904179	chr15:44614684-44821843	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
8	esv3429957	chr15:44743709-44775347	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44721000-44828000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:44733800-44779000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr15:44735600-44779400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr15:44740400-44777400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:44740600-44779000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:44740600-44779000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:44740600-44795600	Weak transcription	Esophagus	oesophagus
8	chr15:44740600-44824600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:44740800-44779000	Weak transcription	Aorta	Aorta
10	chr15:44740800-44779000	Weak transcription	Spleen	Spleen
11	chr15:44741000-44783800	Weak transcription	Right Ventricle	heart
12	chr15:44744800-44778400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr15:44750000-44827400	Weak transcription	Pancreas	Pancrea
14	chr15:44750200-44779000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:44750200-44828000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:44750400-44782800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr15:44750600-44779000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr15:44750600-44781400	Weak transcription	A549	lung
19	chr15:44751000-44795400	Weak transcription	Stomach Mucosa	stomach
20	chr15:44754600-44779600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr15:44754600-44781400	Weak transcription	Brain Substantia Nigra	brain
22	chr15:44754600-44816200	Weak transcription	Brain Angular Gyrus	brain
23	chr15:44754800-44779400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr15:44755000-44776200	Weak transcription	HepG2	liver
25	chr15:44756800-44779400	Weak transcription	K562	blood
26	chr15:44757000-44774200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr15:44757000-44776800	Weak transcription	Lung	lung
28	chr15:44757000-44776800	Weak transcription	Thymus	Thymus
29	chr15:44757000-44777200	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr15:44757000-44777600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr15:44757000-44779400	Weak transcription	Brain Hippocampus Middle	brain
32	chr15:44757000-44781400	Weak transcription	HSMMtube	muscle
33	chr15:44757000-44827400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr15:44757400-44777400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr15:44757600-44779000	Weak transcription	Placenta	Placenta
36	chr15:44757800-44776600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr15:44757800-44777200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr15:44757800-44779600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr15:44759200-44776600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr15:44759600-44776000	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr15:44759600-44776600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr15:44761200-44777600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr15:44761200-44781400	Weak transcription	NHLF	lung
44	chr15:44761400-44777200	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr15:44761400-44778800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr15:44761400-44778800	Weak transcription	NH-A	brain
47	chr15:44761400-44779000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr15:44761400-44779000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr15:44761400-44779000	Weak transcription	HUVEC	blood vessel
50	chr15:44761400-44781400	Weak transcription	HMEC	breast

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