Variant report

Variant	rs3784723
Chromosome Location	chr15:93005759-93005760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93005244..93007903-chr15:93187258..93190010,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2306842	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs3784721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3784724	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784726	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3825983	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8035760	0.81[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92957200-93006400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr15:92972000-93011800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:92972800-93011400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:92973400-93012200	Strong transcription	Brain Germinal Matrix	brain
5	chr15:92973600-93006200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:92973600-93008800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr15:92973600-93011400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr15:92982400-93011800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:92985800-93006600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:92991800-93007400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr15:92995000-93007400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr15:92995200-93006600	Weak transcription	Fetal Stomach	stomach
13	chr15:92995600-93007000	Weak transcription	Fetal Muscle Leg	muscle
14	chr15:92997400-93011400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr15:93000800-93013200	Strong transcription	Fetal Brain Female	brain
16	chr15:93001400-93015800	Weak transcription	Fetal Brain Male	brain
17	chr15:93002200-93005800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr15:93002200-93006000	Weak transcription	NH-A	brain
19	chr15:93002200-93006200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:93002800-93006400	Weak transcription	HSMMtube	muscle
21	chr15:93003600-93007800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:93004200-93006400	Weak transcription	HSMM	muscle
23	chr15:93005400-93008200	Enhancers	NHDF-Ad	bronchial

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