Variant report

Variant	rs8035760
Chromosome Location	chr15:93008472-93008473
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11852344	0.86[EUR][1000 genomes]
rs2306842	0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs3784721	0.81[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs3784723	0.81[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs3784724	0.88[ASN][1000 genomes]
rs3784726	0.83[ASN][1000 genomes]
rs3825983	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92972000-93011800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:92972800-93011400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:92973400-93012200	Strong transcription	Brain Germinal Matrix	brain
4	chr15:92973600-93008800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:92973600-93011400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr15:92982400-93011800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:92997400-93011400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:93000800-93013200	Strong transcription	Fetal Brain Female	brain
9	chr15:93001400-93015800	Weak transcription	Fetal Brain Male	brain
10	chr15:93005800-93010200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:93007000-93010200	Strong transcription	Fetal Muscle Leg	muscle
12	chr15:93007200-93009800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:93007200-93011200	Strong transcription	Fetal Stomach	stomach
14	chr15:93007400-93008600	Strong transcription	Fetal Muscle Trunk	muscle
15	chr15:93007600-93009600	Weak transcription	HSMM	muscle
16	chr15:93007800-93008800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:93007800-93009800	Strong transcription	HSMMtube	muscle
18	chr15:93008200-93009800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:93008400-93014400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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