Variant report

Variant	rs3784926
Chromosome Location	chr16:79605545-79605546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12598123	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16950709	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56178021	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56295211	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72806520	0.80[AMR][1000 genomes]
rs72806521	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72806550	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72806557	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72806564	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv833295	chr16:79568878-79726768	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1060796	chr16:79590617-79609857	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1064997	chr16:79591279-79608618	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1056252	chr16:79591279-79608831	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1063641	chr16:79591279-79614168	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79598800-79605600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr16:79598800-79606400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:79604400-79606000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr16:79604800-79605600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr16:79604800-79605600	Active TSS	Right Atrium	heart
6	chr16:79604800-79605800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr16:79604800-79607000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr16:79605000-79605600	Active TSS	Duodenum Mucosa	Duodenum
9	chr16:79605000-79605600	Active TSS	Duodenum Smooth Muscle	Duodenum
10	chr16:79605000-79605600	Active TSS	Osteobl	bone
11	chr16:79605000-79605800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr16:79605000-79606000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr16:79605000-79606000	Active TSS	NHDF-Ad	bronchial
14	chr16:79605000-79606400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr16:79605000-79606600	Enhancers	Fetal Stomach	stomach
16	chr16:79605000-79606800	Enhancers	Psoas Muscle	Psoas
17	chr16:79605200-79605600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr16:79605200-79605600	Active TSS	Aorta	Aorta
19	chr16:79605200-79605600	Active TSS	Ovary	ovary
20	chr16:79605200-79606000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr16:79605200-79606600	Enhancers	Fetal Muscle Leg	muscle
22	chr16:79605200-79606800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr16:79605200-79607000	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr16:79605400-79605600	Active TSS	Colon Smooth Muscle	Colon
25	chr16:79605400-79605800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr16:79605400-79605800	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr16:79605400-79606000	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr16:79605400-79606800	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links