Variant report

Variant	rs72806564
Chromosome Location	chr16:79606792-79606793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12443665	0.87[ASN][1000 genomes]
rs12447260	0.87[ASN][1000 genomes]
rs12598123	0.83[AMR][1000 genomes]
rs16950709	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784926	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56178021	0.83[AMR][1000 genomes]
rs56295211	0.83[AMR][1000 genomes]
rs59031104	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72806520	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72806521	0.82[AMR][1000 genomes]
rs72806550	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72806557	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv833295	chr16:79568878-79726768	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1060796	chr16:79590617-79609857	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1064997	chr16:79591279-79608618	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1056252	chr16:79591279-79608831	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1063641	chr16:79591279-79614168	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79604800-79607000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr16:79605000-79606800	Enhancers	Psoas Muscle	Psoas
3	chr16:79605200-79606800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr16:79605200-79607000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr16:79605400-79606800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr16:79605600-79606800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr16:79605600-79606800	Enhancers	Ovary	ovary
8	chr16:79605800-79607000	Enhancers	Fetal Lung	lung
9	chr16:79606200-79606800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr16:79606200-79606800	Bivalent Enhancer	Fetal Brain Male	brain
11	chr16:79606200-79606800	Bivalent Enhancer	Fetal Heart	heart
12	chr16:79606400-79606800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
13	chr16:79606400-79606800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
14	chr16:79606400-79606800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr16:79606400-79606800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr16:79606400-79606800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr16:79606400-79607000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr16:79606600-79606800	Enhancers	Brain Substantia Nigra	brain
19	chr16:79606600-79607000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr16:79606600-79614000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr16:79606600-79623000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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