Variant report

Variant	rs3787900
Chromosome Location	chr21:39840824-39840825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:39839516..39841247-chr21:39843114..39845703,2	K562	blood:
2	chr21:39838779..39841665-chr21:39845089..39847967,2	MCF-7	breast:
3	chr21:39839354..39841016-chr21:39844203..39845796,2	K562	blood:
4	chr21:39840191..39842812-chr21:39847792..39850262,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3787908	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834098	chr21:39691898-39845254	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1059340	chr21:39817504-39881353	Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39811200-39847400	Weak transcription	Right Ventricle	heart
2	chr21:39812800-39844600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr21:39833200-39842800	Weak transcription	Esophagus	oesophagus
4	chr21:39835800-39842800	Weak transcription	Left Ventricle	heart
5	chr21:39836000-39844400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr21:39836400-39841000	Strong transcription	HUVEC	blood vessel
7	chr21:39836600-39842600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr21:39838000-39844400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr21:39838400-39842600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr21:39838800-39841200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr21:39839800-39843800	Weak transcription	Adipose Nuclei	Adipose
12	chr21:39839800-39844400	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr21:39840000-39841600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr21:39840000-39843600	Weak transcription	Primary B cells from cord blood	blood
15	chr21:39840000-39844200	Genic enhancers	Primary hematopoietic stem cells	blood
16	chr21:39840200-39841000	Enhancers	HepG2	liver
17	chr21:39840200-39841800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr21:39840200-39842800	Weak transcription	Lung	lung
19	chr21:39840200-39842800	Weak transcription	Spleen	Spleen
20	chr21:39840200-39844400	Weak transcription	Fetal Thymus	thymus
21	chr21:39840200-39846000	Weak transcription	Aorta	Aorta
22	chr21:39840400-39842400	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr21:39840600-39842400	Weak transcription	Primary monocytes fromperipheralblood	blood

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