Variant report

Variant	rs3787908
Chromosome Location	chr21:39873673-39873674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:39868583..39871033-chr21:39873297..39876116,2	K562	blood:

Variant related genes	Relation type
ENSG00000157554	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11909285	0.92[CHB][hapmap]
rs17193990	0.92[CHB][hapmap];0.93[ASN][1000 genomes]
rs2836457	1.00[MEX][hapmap]
rs2836467	1.00[MEX][hapmap]
rs3787900	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059340	chr21:39817504-39881353	Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1064436	chr21:39846571-39875576	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39860400-39879000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr21:39862000-39877400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr21:39866800-39875200	Weak transcription	HMEC	breast
4	chr21:39867000-39878800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr21:39867200-39877200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr21:39868400-39875200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr21:39870000-39875800	Weak transcription	Fetal Lung	lung
8	chr21:39870200-39875400	Weak transcription	Left Ventricle	heart
9	chr21:39870400-39875600	Weak transcription	Right Atrium	heart
10	chr21:39870800-39874400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr21:39870800-39875600	Weak transcription	Lung	lung
12	chr21:39871400-39877200	Weak transcription	Spleen	Spleen
13	chr21:39871400-39878600	Weak transcription	Fetal Thymus	thymus
14	chr21:39871600-39874400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr21:39871600-39874600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr21:39871800-39875200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr21:39871800-39875400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr21:39871800-39875800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr21:39871800-39876400	Weak transcription	Primary B cells from cord blood	blood
20	chr21:39872200-39875000	Enhancers	HUVEC	blood vessel
21	chr21:39872200-39875200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr21:39872200-39875200	Weak transcription	Aorta	Aorta
23	chr21:39872200-39875200	Weak transcription	NH-A	brain
24	chr21:39872200-39875400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr21:39872200-39875400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr21:39872400-39875200	Weak transcription	Adipose Nuclei	Adipose
27	chr21:39872600-39875400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr21:39872600-39875400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr21:39873200-39873800	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr21:39873200-39874000	Enhancers	Primary hematopoietic stem cells	blood
31	chr21:39873200-39874600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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