Variant report

Variant	rs3788097
Chromosome Location	chr21:45433269-45433270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr21:45216557..45218790-chr21:45430964..45433314,2	K562	blood:
2	chr21:45432277..45433979-chr21:45497915..45499454,2	K562	blood:
3	chr21:45430220..45433985-chr21:45525454..45528690,3	MCF-7	breast:
4	chr21:45431683..45433635-chr21:45552005..45554023,2	K562	blood:
5	chr21:45207900..45209521-chr21:45431429..45433903,2	MCF-7	breast:
6	chr21:45400066..45403685-chr21:45432405..45434021,3	MCF-7	breast:
7	chr21:45430262..45433765-chr21:45524105..45528370,12	MCF-7	breast:
8	chr21:45138839..45140766-chr21:45430959..45433329,2	MCF-7	breast:
9	chr21:45432713..45434258-chr21:45470082..45471621,2	MCF-7	breast:
10	chr21:45282965..45285916-chr21:45430237..45433854,8	MCF-7	breast:
11	chr21:45430507..45434109-chr21:45525660..45529122,6	K562	blood:
12	chr21:45207339..45211369-chr21:45429720..45433341,4	K562	blood:
13	chr21:45194435..45196529-chr21:45430535..45433342,2	MCF-7	breast:
14	chr21:45431322..45434131-chr21:45718820..45721746,2	K562	blood:
15	chr20:49406551..49408394-chr21:45432299..45433815,2	MCF-7	breast:
16	chr21:45419220..45421707-chr21:45432481..45434970,2	MCF-7	breast:
17	chr21:45432401..45434388-chr21:45557544..45559528,2	K562	blood:
18	chr21:45390463..45393290-chr21:45430971..45433661,3	MCF-7	breast:
19	chr21:45429712..45433999-chr21:45522896..45529122,10	K562	blood:
20	chr17:56708016..56709699-chr21:45432044..45433647,2	MCF-7	breast:
21	chr21:45432311..45434662-chr21:45470417..45472446,3	K562	blood:
22	chr21:45283737..45286588-chr21:45430466..45433524,3	K562	blood:
23	chr21:45366033..45367987-chr21:45430998..45433821,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000160216	Chromatin interaction
ENSG00000160221	Chromatin interaction
ENSG00000241945	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000160209	Chromatin interaction
ENSG00000160214	Chromatin interaction
ENSG00000160213	Chromatin interaction
ENSG00000141959	Chromatin interaction
ENSG00000160218	Chromatin interaction

Extended variants
information (count: 138 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs1005046	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs10854489	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11089115	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1131999	0.94[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12627239	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs13046297	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs13049059	0.95[GIH][hapmap];1.00[JPT][hapmap]
rs13050630	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1858665	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2020945	0.94[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap]
rs2020946	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2020947	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2020948	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2039272	0.80[ASN][1000 genomes]
rs2071142	0.94[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap]
rs2071143	0.88[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap]
rs2071146	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2071152	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2071154	0.81[CEU][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs2073432	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2073433	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs2156428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2238704	0.94[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.83[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2238705	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2238706	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2238707	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2238708	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2238709	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2238710	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2238711	0.94[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2238712	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2242950	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2242953	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2242954	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2243348	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2243999	0.94[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap]
rs2245372	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2245380	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2245386	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2245462	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2245759	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2247400	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2251267	0.94[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap]
rs2255716	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2255828	0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2255922	0.86[ASN][1000 genomes]
rs2256392	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2256441	0.94[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.83[TSI][hapmap];0.81[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2276530	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2277806	0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2299812	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2299813	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2299815	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2299816	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs2299818	0.88[ASN][1000 genomes]
rs2299820	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2516519	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2516521	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs2838466	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2838467	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2838468	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2838471	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2838472	0.94[ASW][hapmap];0.94[CEU][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.81[TSI][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2838473	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2838474	0.93[ASN][1000 genomes]
rs2838476	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2838477	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2838478	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2838480	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2838481	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2838482	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2838483	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2838485	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2838486	0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2838488	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2838489	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2838490	0.94[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap]
rs2838491	0.94[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap]
rs2838492	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2838494	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2838496	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs2838502	0.94[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap]
rs2838503	0.94[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap]
rs2850150	0.80[ASN][1000 genomes]
rs28859288	0.89[ASN][1000 genomes]
rs35610725	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3788098	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3788101	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3788102	0.85[EUR][1000 genomes]
rs4818878	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4818881	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs4819366	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4819370	0.82[ASN][1000 genomes]
rs4819376	0.94[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap]
rs4819378	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs56384549	0.92[ASN][1000 genomes]
rs59675192	0.85[EUR][1000 genomes]
rs6518345	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs7277269	0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7279727	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7280558	0.94[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap]
rs7281270	0.80[ASN][1000 genomes]
rs7281768	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7281778	0.96[ASN][1000 genomes]
rs7282643	0.98[ASN][1000 genomes]
rs729882	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs756554	0.94[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap]
rs8126564	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs8126754	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8126958	0.82[ASW][hapmap];0.94[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8129971	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8132918	0.82[ASN][1000 genomes]
rs8133422	0.93[ASN][1000 genomes]
rs8133610	0.82[ASN][1000 genomes]
rs915772	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs915774	0.95[GIH][hapmap]
rs915878	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9306169	0.85[EUR][1000 genomes]
rs9306171	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9306172	0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9306174	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs965733	0.80[CEU][hapmap];0.82[TSI][hapmap]
rs968714	0.94[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap]
rs9974165	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9974315	0.93[ASN][1000 genomes]
rs9975708	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9975978	0.88[ASN][1000 genomes]
rs9977564	0.83[ASN][1000 genomes]
rs9978130	0.96[ASN][1000 genomes]
rs9981257	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9982663	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33817	chr21:45169412-46031810	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
2	nsv913887	chr21:45344799-45670770	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv1063752	chr21:45406095-45460342	Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv459293	chr21:45415913-45555079	Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv587721	chr21:45415913-45555079	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	esv3360464	chr21:45431274-45433672	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
7	esv3323312	chr21:45431349-45433897	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3788097	PWP2	cis	Muscle Skeletal	GTEx
rs3788097	PWP2	Cis_1M	lymphoblastoid	RTeQTL
rs3788097	PWP2	cis	lymphoblastoid	seeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:45429800-45433800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr21:45431200-45433400	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr21:45431200-45433400	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr21:45431200-45433400	Active TSS	Rectal Smooth Muscle	rectum
5	chr21:45431200-45433400	Active TSS	A549	lung
6	chr21:45431200-45433600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr21:45431200-45433600	Active TSS	Psoas Muscle	Psoas
8	chr21:45431200-45433800	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr21:45431200-45433800	Active TSS	H9 Cell Line	embryonic stem cell
10	chr21:45431200-45433800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr21:45431200-45434000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr21:45431200-45434200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr21:45431200-45434200	Active TSS	HSMMtube	muscle
14	chr21:45431400-45433400	Active TSS	H1 Cell Line	embryonic stem cell
15	chr21:45431400-45433400	Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr21:45431400-45433400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr21:45431400-45433400	Active TSS	Primary T killer memory cells from peripheral blood	blood
18	chr21:45431400-45433400	Active TSS	Brain Substantia Nigra	brain
19	chr21:45431400-45433400	Active TSS	Esophagus	oesophagus
20	chr21:45431400-45433400	Active TSS	Fetal Intestine Large	intestine
21	chr21:45431400-45433400	Active TSS	Fetal Intestine Small	intestine
22	chr21:45431400-45433400	Active TSS	HSMM	muscle
23	chr21:45431400-45433600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr21:45431400-45433600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr21:45431400-45433800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr21:45431400-45433800	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr21:45431400-45433800	Active TSS	Sigmoid Colon	Sigmoid Colon
28	chr21:45431400-45434000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr21:45431400-45434000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
30	chr21:45431400-45434200	Active TSS	Thymus	Thymus
31	chr21:45431400-45434600	Active TSS	GM12878-XiMat	blood
32	chr21:45431600-45433400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr21:45431600-45433400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr21:45431600-45433400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
35	chr21:45431600-45433400	Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr21:45431600-45433400	Active TSS	Gastric	stomach
37	chr21:45431600-45433600	Active TSS	Lung	lung
38	chr21:45432600-45434200	Flanking Active TSS	Primary B cells from cord blood	blood
39	chr21:45432600-45435000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr21:45432800-45433400	Flanking Active TSS	Fetal Muscle Trunk	muscle
41	chr21:45432800-45433600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
42	chr21:45432800-45433600	Flanking Active TSS	Fetal Brain Female	brain
43	chr21:45432800-45433600	Flanking Active TSS	Right Ventricle	heart
44	chr21:45432800-45434000	Flanking Active TSS	Adipose Nuclei	Adipose
45	chr21:45432800-45435000	Flanking Active TSS	Primary hematopoietic stem cells	blood
46	chr21:45432800-45436000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr21:45433000-45433400	Flanking Active TSS	Fetal Brain Male	brain
48	chr21:45433000-45433400	Flanking Active TSS	Placenta	Placenta
49	chr21:45433000-45433400	Flanking Active TSS	Left Ventricle	heart
50	chr21:45433000-45433600	Flanking Active TSS	Primary B cells from peripheral blood	blood

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