Variant report

Variant	rs3789221
Chromosome Location	chr6:24189538-24189539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12153942	0.84[JPT][hapmap]
rs1343624	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888894	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2000070	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2996452	0.83[EUR][1000 genomes]
rs56219411	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61566842	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6914345	0.93[ASN][1000 genomes]
rs6923999	0.81[EUR][1000 genomes]
rs793847	0.80[ASN][1000 genomes]
rs793855	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv601146	chr6:24166233-24215665	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24153800-24200800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:24172800-24194800	Weak transcription	Fetal Intestine Large	intestine
3	chr6:24177800-24198400	Weak transcription	A549	lung
4	chr6:24181400-24189600	Strong transcription	HepG2	liver
5	chr6:24184200-24195200	Weak transcription	Pancreas	Pancrea
6	chr6:24184600-24195000	Weak transcription	Fetal Intestine Small	intestine
7	chr6:24186600-24196000	Weak transcription	Fetal Kidney	kidney
8	chr6:24189400-24190000	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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