The 2.0 version of rSNPBase

Variant report

Variant rs3789707
Chromosome Location chr1:95381024-95381025
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95329000-95385000 Weak transcription Colonic Mucosa Colon
2 chr1:95357800-95390800 Weak transcription Primary hematopoietic stem cells blood
3 chr1:95364000-95388600 Weak transcription Fetal Brain Male brain
4 chr1:95364800-95384800 Weak transcription Brain Inferior Temporal Lobe brain
5 chr1:95368400-95388400 Weak transcription Fetal Intestine Large intestine
6 chr1:95368400-95390600 Weak transcription Fetal Thymus thymus
7 chr1:95369000-95388200 Weak transcription Fetal Brain Female brain
8 chr1:95372800-95385000 Weak transcription Fetal Kidney kidney
9 chr1:95373800-95382400 Genic enhancers Fetal Muscle Leg muscle
10 chr1:95374000-95381200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr1:95374000-95384600 Weak transcription Fetal Intestine Small intestine
12 chr1:95374600-95381200 Weak transcription Fetal Stomach stomach
13 chr1:95375400-95382000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr1:95375800-95384400 Weak transcription Fetal Heart heart
15 chr1:95375800-95385000 Weak transcription A549 lung
16 chr1:95376000-95384800 Weak transcription Placenta Amnion Placenta Amnion
17 chr1:95376200-95384600 Weak transcription Fetal Lung lung
18 chr1:95376400-95383200 Weak transcription HMEC breast
19 chr1:95376400-95384800 Weak transcription HUVEC blood vessel
20 chr1:95376400-95385000 Weak transcription ES-WA7 Cell Line embryonic stem cell
21 chr1:95376600-95381200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
22 chr1:95376600-95381200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr1:95376600-95383400 Weak transcription HSMMtube muscle
24 chr1:95376600-95385000 Weak transcription NHEK skin
25 chr1:95376800-95383200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr1:95377200-95381200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
27 chr1:95377200-95385400 Weak transcription H9 Cell Line embryonic stem cell
28 chr1:95378000-95383200 Weak transcription Stomach Mucosa stomach
29 chr1:95378000-95384000 Enhancers Right Atrium heart
30 chr1:95378200-95381800 Enhancers Stomach Smooth Muscle stomach
31 chr1:95378200-95383200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr1:95378200-95385200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
33 chr1:95378400-95385200 Weak transcription Placenta Placenta
34 chr1:95378600-95381200 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr1:95378600-95382000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
36 chr1:95378600-95384800 Weak transcription Brain Angular Gyrus brain
37 chr1:95378600-95385000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr1:95378600-95388600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
39 chr1:95378800-95384800 Weak transcription iPS-15b Cell Line embryonic stem cell
40 chr1:95379000-95384400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr1:95379200-95381200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr1:95379200-95384800 Weak transcription Brain Substantia Nigra brain
43 chr1:95379200-95384800 Weak transcription Rectal Mucosa Donor 29 rectum
44 chr1:95379400-95383200 Weak transcription Brain Cingulate Gyrus brain
45 chr1:95379400-95384600 Weak transcription HUES64 Cell Line embryonic stem cell
46 chr1:95379400-95384800 Weak transcription HUES6 Cell Line embryonic stem cell
47 chr1:95379600-95381600 Enhancers Pancreas Pancrea
48 chr1:95379600-95383000 Weak transcription NH-A brain
49 chr1:95379600-95383200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr1:95379800-95381200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin

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Last update: Aug 31, 2015