Variant report

Variant	rs3789857
Chromosome Location	chr8:8658501-8658502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10090152	0.89[ASN][1000 genomes]
rs10100066	0.89[ASN][1000 genomes]
rs10103163	0.89[ASN][1000 genomes]
rs10103282	0.89[ASN][1000 genomes]
rs10110711	0.89[ASN][1000 genomes]
rs11774860	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11775486	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11777812	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11778326	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11778330	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11781430	0.89[ASN][1000 genomes]
rs11985640	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17154743	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17154756	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17154758	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17630714	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17631022	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17631052	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17698256	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2048420	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34722673	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35432123	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3748142	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3748143	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3827810	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3827812	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55657655	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55961293	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56100346	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73517985	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73519953	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7831224	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs964771	0.89[ASN][1000 genomes]
rs964772	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs964773	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1033463	chr8:8221922-8674333	Weak transcription Bivalent/Poised TSS Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv539451	chr8:8221922-8674333	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1019606	chr8:8353661-8736992	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv539456	chr8:8353661-8736992	Strong transcription Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv995047	chr8:8353662-8857913	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv1022511	chr8:8493992-8737132	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv539457	chr8:8493992-8737132	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	esv1824870	chr8:8583943-8699382	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
10	nsv610189	chr8:8590437-8664940	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
11	nsv831228	chr8:8608387-8790790	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv1018828	chr8:8609880-8790660	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
13	nsv1022331	chr8:8610035-8787981	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
14	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8637600-8679800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:8642800-8660000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr8:8649200-8666400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:8649400-8661800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:8649400-8663600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:8649400-8663800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr8:8650800-8663400	Weak transcription	Hela-S3	cervix
8	chr8:8652600-8659200	Weak transcription	Ovary	ovary
9	chr8:8653800-8662000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:8653800-8662600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:8653800-8663400	Weak transcription	HMEC	breast
12	chr8:8653800-8674800	Weak transcription	Brain Germinal Matrix	brain
13	chr8:8654000-8659400	Weak transcription	HepG2	liver
14	chr8:8654000-8663600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr8:8654000-8666800	Weak transcription	NHDF-Ad	bronchial
16	chr8:8654000-8666800	Weak transcription	NHLF	lung
17	chr8:8654000-8671000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:8654800-8660400	Enhancers	Fetal Lung	lung
19	chr8:8655000-8663400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr8:8655200-8659600	Weak transcription	HSMMtube	muscle
21	chr8:8655200-8662200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr8:8655200-8663400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr8:8655200-8663600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr8:8655200-8663800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr8:8655200-8666400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr8:8655200-8680600	Weak transcription	Colonic Mucosa	Colon
27	chr8:8655400-8659000	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr8:8655400-8662000	Weak transcription	Small Intestine	intestine
29	chr8:8655400-8662000	Weak transcription	Spleen	Spleen
30	chr8:8655400-8663600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr8:8655400-8663600	Weak transcription	HSMM	muscle
32	chr8:8655400-8666800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr8:8655600-8661600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr8:8655600-8673400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr8:8655600-8685600	Weak transcription	Fetal Brain Female	brain
36	chr8:8655800-8661600	Weak transcription	Primary T cells from cord blood	blood
37	chr8:8655800-8662000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr8:8655800-8663600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr8:8655800-8666200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr8:8655800-8666800	Weak transcription	Fetal Brain Male	brain
41	chr8:8655800-8669000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr8:8655800-8669200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr8:8655800-8669200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr8:8655800-8669200	Weak transcription	Thymus	Thymus
45	chr8:8656000-8659000	Weak transcription	Dnd41	blood
46	chr8:8656000-8659200	Weak transcription	Right Atrium	heart
47	chr8:8656000-8661200	Weak transcription	Brain Hippocampus Middle	brain
48	chr8:8656000-8662000	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr8:8656000-8662000	Weak transcription	Brain Angular Gyrus	brain
50	chr8:8656000-8663000	Weak transcription	Primary T cells fromperipheralblood	blood

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