Variant report

Variant	rs3792211
Chromosome Location	chr4:46994495-46994496
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr4:46994323-46994534	H1-hESC	embryonic stem cell:	n/a	n/a
2	USF1	chr4:46994317-46994542	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
GABRB1	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10025379	0.85[YRI][hapmap]
rs10028342	0.85[YRI][hapmap]
rs13112436	0.82[YRI][hapmap]
rs13151759	0.91[CEU][hapmap];0.90[CHD][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13151769	0.91[CEU][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2055940	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2055942	0.85[MKK][hapmap];0.85[YRI][hapmap]
rs2229940	0.90[CEU][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2351170	0.82[YRI][hapmap]
rs7683042	0.91[CEU][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7683996	0.85[YRI][hapmap]
rs9291294	0.89[YRI][hapmap]
rs9291295	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470031	chr4:46982218-47006399	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3792211	DEPDC1B	trans	parietal	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46993200-46995400	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr4:46993400-46997400	Active TSS	Brain Angular Gyrus	brain
3	chr4:46993400-46997600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:46994000-46994600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:46994000-46994600	Bivalent Enhancer	Fetal Heart	heart
6	chr4:46994000-46997400	Active TSS	Brain Anterior Caudate	brain
7	chr4:46994200-46994600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
8	chr4:46994200-46994800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:46994200-46996400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
10	chr4:46994400-46994600	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
11	chr4:46994400-46994600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
12	chr4:46994400-46994600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
13	chr4:46994400-46994600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
14	chr4:46994400-46994600	Bivalent Enhancer	Fetal Kidney	kidney
15	chr4:46994400-46994600	Flanking Bivalent TSS/Enh	Right Ventricle	heart
16	chr4:46994400-46994800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
17	chr4:46994400-46995000	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:46994400-46995000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
19	chr4:46994400-46995200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:46994400-46995200	Enhancers	Esophagus	oesophagus
21	chr4:46994400-46995200	Active TSS	Left Ventricle	heart
22	chr4:46994400-46995600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
23	chr4:46994400-46995600	Enhancers	Pancreas	Pancrea
24	chr4:46994400-46996600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr4:46994400-46996600	Bivalent/Poised TSS	Fetal Brain Female	brain

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