Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102125679..102127225-chr9:102136108..102139035,2	K562	blood:

Variant related genes	Relation type
ENSG00000271086	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1002841	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1002842	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1003134	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10819661	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10988784	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10988785	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10988786	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10988787	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10988791	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10988796	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10988798	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16918546	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16918551	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4743341	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66709256	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs701357	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs894674	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs920770	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs920771	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs920772	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs920773	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9792547	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1046898	chr9:102111890-102163313	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102114800-102131600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:102120600-102126200	Enhancers	Fetal Brain Male	brain
3	chr9:102120600-102126800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr9:102121000-102128200	Weak transcription	Right Atrium	heart
5	chr9:102122800-102129800	Weak transcription	Right Ventricle	heart
6	chr9:102123400-102129800	Weak transcription	Left Ventricle	heart
7	chr9:102124400-102130200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr9:102124600-102127400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr9:102124600-102127600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:102124600-102128600	Weak transcription	Psoas Muscle	Psoas
11	chr9:102125000-102125800	Weak transcription	Adipose Nuclei	Adipose
12	chr9:102125000-102128800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:102125000-102130400	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:102125400-102125800	Enhancers	Fetal Thymus	thymus
15	chr9:102125400-102127600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:102125600-102130200	Weak transcription	Fetal Brain Female	brain

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