Variant report

Variant	rs3793735
Chromosome Location	chr10:1282828-1282829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr10:1282421-1282846	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAX	chr10:1282387-1283030	H1-hESC	embryonic stem cell:	n/a	chr10:1282698-1282708 chr10:1282698-1282708 chr10:1282697-1282707 chr10:1282696-1282709 chr10:1282698-1282707 chr10:1282697-1282707 chr10:1282697-1282708
3	MAX	chr10:1282344-1282995	H1-hESC	embryonic stem cell:	n/a	chr10:1282698-1282708 chr10:1282698-1282708 chr10:1282697-1282707 chr10:1282696-1282709 chr10:1282698-1282707 chr10:1282697-1282707 chr10:1282697-1282708
4	MAX	chr10:1282403-1283046	H1-hESC	embryonic stem cell:	n/a	chr10:1282698-1282708 chr10:1282698-1282708 chr10:1282697-1282707 chr10:1282696-1282709 chr10:1282698-1282707 chr10:1282697-1282707 chr10:1282697-1282708
5	E2F6	chr10:1282338-1283016	H1-hESC	embryonic stem cell:	n/a	n/a
6	SIN3A	chr10:1282420-1282880	H1-hESC	embryonic stem cell:	n/a	chr10:1282814-1282823 chr10:1282679-1282692 chr10:1282699-1282708 chr10:1282697-1282706
7	FOXP2	chr10:1282315-1282883	PFSK-1	brain:	n/a	n/a
8	MYC	chr10:1282517-1282901	H1-hESC	embryonic stem cell:	n/a	chr10:1282698-1282708 chr10:1282698-1282708 chr10:1282697-1282707 chr10:1282696-1282709 chr10:1282698-1282707 chr10:1282697-1282707 chr10:1282697-1282708
9	RAD21	chr10:1282299-1282972	H1-hESC	embryonic stem cell:	n/a	chr10:1282780-1282794
10	FOXA1	chr10:1282645-1282985	T-47D	breast:	n/a	n/a
11	POLR2A	chr10:1281889-1282856	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ADARB2	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10794733	0.87[CEU][hapmap]
rs11250378	0.82[GIH][hapmap]
rs12359356	0.93[GIH][hapmap]
rs2805560	0.82[GIH][hapmap]
rs3793739	0.95[CEU][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs3817043	1.00[LWK][hapmap]
rs3849973	0.87[CEU][hapmap];0.81[GIH][hapmap]
rs4880494	0.88[GIH][hapmap]
rs4880803	0.87[CEU][hapmap]
rs4880807	0.87[CEU][hapmap]
rs7392620	0.91[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1052540	chr10:887562-1300134	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv540407	chr10:887562-1300134	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv533861	chr10:945438-1382068	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv530117	chr10:945438-1729634	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv817532	chr10:964660-1885945	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv949405	chr10:1010464-1376105	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv894725	chr10:1110464-1421516	Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv1041498	chr10:1117200-1760190	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv1052682	chr10:1162925-1675641	Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv466699	chr10:1166400-1351088	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv549768	chr10:1166400-1351088	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv1043944	chr10:1168095-1626019	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
14	nsv540411	chr10:1168095-1626019	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
15	nsv1045618	chr10:1179519-1537451	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv1047911	chr10:1182123-1515126	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
17	nsv1041995	chr10:1195214-1286740	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv1046041	chr10:1195214-2189155	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
19	nsv1039304	chr10:1203718-1287772	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
20	nsv527883	chr10:1218030-1314548	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	esv2761563	chr10:1230443-1341958	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv894732	chr10:1230968-1492512	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv1037054	chr10:1232041-1865296	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
24	nsv540413	chr10:1232041-1865296	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
25	nsv549769	chr10:1244020-1764966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
26	esv3317130	chr10:1279452-1284250	Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
27	esv3317141	chr10:1279452-1284250	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs3793735	ADARB2	cis	Whole Blood	GTEx
rs3793735	ADARB2	cis	multi-tissue	Pritchard
rs3793735	ADARB2	cis	Artery Tibial	GTEx
rs3793735	ADARB2	cis	Artery Aorta	GTEx
rs3793735	ADARB2	cis	Thyroid	GTEx
rs3793735	ADARB2	cis	lung	GTEx

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1281600-1283000	Active TSS	Brain Anterior Caudate	brain
2	chr10:1281800-1287800	Weak transcription	Right Atrium	heart
3	chr10:1282000-1283200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:1282000-1283400	Weak transcription	Lung	lung
5	chr10:1282200-1283000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr10:1282200-1283000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
7	chr10:1282200-1283400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:1282400-1283000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr10:1282400-1283000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:1282400-1283000	Flanking Bivalent TSS/Enh	Dnd41	blood
11	chr10:1282400-1283200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr10:1282400-1283200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:1282400-1283800	Enhancers	Primary B cells from cord blood	blood
14	chr10:1282600-1283000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:1282600-1283000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr10:1282600-1283000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr10:1282600-1283000	Enhancers	Primary T cells from cord blood	blood
18	chr10:1282600-1283000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:1282600-1283000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
20	chr10:1282600-1283000	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:1282600-1283200	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr10:1282600-1283800	Enhancers	H1 Cell Line	embryonic stem cell
23	chr10:1282600-1283800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:1282600-1284200	Enhancers	Primary hematopoietic stem cells	blood
25	chr10:1282800-1283000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr10:1282800-1283000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:1282800-1283000	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr10:1282800-1283000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
29	chr10:1282800-1283000	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr10:1282800-1283000	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
31	chr10:1282800-1283000	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr10:1282800-1283000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:1282800-1283000	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
34	chr10:1282800-1283000	Bivalent Enhancer	Duodenum Mucosa	Duodenum
35	chr10:1282800-1283000	Enhancers	Esophagus	oesophagus
36	chr10:1282800-1283000	Bivalent Enhancer	Fetal Muscle Leg	muscle
37	chr10:1282800-1283200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
38	chr10:1282800-1283200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
39	chr10:1282800-1283200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr10:1282800-1283400	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
41	chr10:1282800-1283600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
42	chr10:1282800-1284600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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