Variant report

Variant	rs3793739
Chromosome Location	chr10:1282530-1282531
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10794733	0.83[CEU][hapmap]
rs12359356	0.89[GIH][hapmap]
rs3793735	0.95[CEU][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs3849973	0.83[CEU][hapmap]
rs4880494	0.84[GIH][hapmap]
rs4880803	0.83[CEU][hapmap]
rs4880807	0.83[CEU][hapmap]
rs7392620	0.87[CEU][hapmap];0.89[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1052540	chr10:887562-1300134	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv540407	chr10:887562-1300134	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv533861	chr10:945438-1382068	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv530117	chr10:945438-1729634	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv817532	chr10:964660-1885945	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv949405	chr10:1010464-1376105	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv894725	chr10:1110464-1421516	Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv1041498	chr10:1117200-1760190	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv1052682	chr10:1162925-1675641	Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv466699	chr10:1166400-1351088	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv549768	chr10:1166400-1351088	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv1043944	chr10:1168095-1626019	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
14	nsv540411	chr10:1168095-1626019	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
15	nsv1045618	chr10:1179519-1537451	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv1047911	chr10:1182123-1515126	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
17	nsv1041995	chr10:1195214-1286740	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv1046041	chr10:1195214-2189155	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
19	nsv1039304	chr10:1203718-1287772	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
20	nsv527883	chr10:1218030-1314548	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	esv2761563	chr10:1230443-1341958	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv894732	chr10:1230968-1492512	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv1037054	chr10:1232041-1865296	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
24	nsv540413	chr10:1232041-1865296	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
25	nsv549769	chr10:1244020-1764966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
26	esv3317130	chr10:1279452-1284250	Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
27	esv3317141	chr10:1279452-1284250	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
28	esv1809355	chr10:1281405-1282710	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs3793739	ADARB2	cis	lung	GTEx
rs3793739	ADARB2	cis	Artery Tibial	GTEx
rs3793739	ADARB2	cis	Thyroid	GTEx
rs3793739	ADARB2	cis	Whole Blood	GTEx
rs3793739	ADARB2	cis	Artery Aorta	GTEx

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1280400-1282600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr10:1280800-1282800	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr10:1281000-1282600	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr10:1281000-1282800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr10:1281200-1282600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:1281200-1282600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:1281200-1282600	Active TSS	Pancreas	Pancrea
8	chr10:1281400-1282600	Active TSS	H9 Cell Line	embryonic stem cell
9	chr10:1281400-1282600	Active TSS	Brain Angular Gyrus	brain
10	chr10:1281400-1282600	Weak transcription	Gastric	stomach
11	chr10:1281400-1282800	Active TSS	Brain Cingulate Gyrus	brain
12	chr10:1281600-1282600	Active TSS	H1 Cell Line	embryonic stem cell
13	chr10:1281600-1282600	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr10:1281600-1282600	Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr10:1281600-1282600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:1281600-1282600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:1281600-1282600	Active TSS	Primary T cells from cord blood	blood
18	chr10:1281600-1282600	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr10:1281600-1282600	Active TSS	Brain Substantia Nigra	brain
20	chr10:1281600-1282600	Active TSS	HSMM	muscle
21	chr10:1281600-1283000	Active TSS	Brain Anterior Caudate	brain
22	chr10:1281800-1282600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:1281800-1287800	Weak transcription	Right Atrium	heart
24	chr10:1282000-1282600	Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr10:1282000-1282600	Active TSS	Fetal Kidney	kidney
26	chr10:1282000-1283200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:1282000-1283400	Weak transcription	Lung	lung
28	chr10:1282200-1282600	Flanking Active TSS	Primary hematopoietic stem cells	blood
29	chr10:1282200-1282800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:1282200-1282800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:1282200-1282800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
32	chr10:1282200-1283000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
33	chr10:1282200-1283000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
34	chr10:1282200-1283400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr10:1282400-1282600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:1282400-1282600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr10:1282400-1282600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
38	chr10:1282400-1282600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
39	chr10:1282400-1282600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr10:1282400-1282600	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--
41	chr10:1282400-1282600	Active TSS	Primary T killer memory cells from peripheral blood	blood
42	chr10:1282400-1282600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
43	chr10:1282400-1282600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
44	chr10:1282400-1282600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
45	chr10:1282400-1282800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:1282400-1282800	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
47	chr10:1282400-1282800	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
48	chr10:1282400-1282800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
49	chr10:1282400-1282800	Bivalent Enhancer	Placenta	Placenta
50	chr10:1282400-1282800	Enhancers	Fetal Thymus	thymus

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