Variant report

Variant	rs3795617
Chromosome Location	chr1:192603690-192603691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10127997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12044559	1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs12759003	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3884536	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4233424	0.96[CEU][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs4319308	0.96[CEU][hapmap];0.93[GIH][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59105666	0.98[EUR][1000 genomes]
rs6658382	0.81[CEU][hapmap]
rs7553821	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv467005	chr1:192549912-192625360	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv548659	chr1:192549912-192625360	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3795617	RGS1	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192597000-192605600	Enhancers	Fetal Lung	lung
2	chr1:192599000-192608200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:192600200-192620400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:192601600-192604000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:192601600-192607000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:192601800-192604400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:192602000-192604000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:192602800-192608200	Weak transcription	Fetal Intestine Large	intestine
9	chr1:192603000-192604200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:192603200-192604200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:192603200-192604200	Weak transcription	Osteobl	bone
12	chr1:192603400-192604200	Weak transcription	Right Ventricle	heart
13	chr1:192603400-192605000	Weak transcription	Fetal Heart	heart
14	chr1:192603400-192607600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:192603400-192608800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:192603400-192608800	Weak transcription	HSMMtube	muscle
17	chr1:192603600-192604000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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