Variant report

Variant	rs3884536
Chromosome Location	chr1:192599181-192599182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10127997	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12044559	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12759003	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3795617	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4233424	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4319308	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59105666	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv467005	chr1:192549912-192625360	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv548659	chr1:192549912-192625360	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192596200-192602200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:192596400-192599600	Weak transcription	Stomach Mucosa	stomach
3	chr1:192596400-192601800	Weak transcription	Fetal Intestine Large	intestine
4	chr1:192597000-192605600	Enhancers	Fetal Lung	lung
5	chr1:192597800-192600000	Enhancers	Adipose Nuclei	Adipose
6	chr1:192597800-192602600	Enhancers	Liver	Liver
7	chr1:192598000-192602000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr1:192598400-192599800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:192598600-192599800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:192598800-192600000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:192598800-192603200	Weak transcription	Right Ventricle	heart
12	chr1:192599000-192599800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:192599000-192602200	Weak transcription	Fetal Heart	heart
14	chr1:192599000-192608200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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