Variant report

Variant	rs3796529
Chromosome Location	chr4:57797414-57797415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:57772021..57774734-chr4:57795281..57798143,2	K562	blood:

Variant related genes	Relation type
ENSG00000084093	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12645070	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17081933	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17081935	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17087335	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs1718824	0.85[CEU][hapmap]
rs2170073	0.86[JPT][hapmap]
rs2227901	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3733309	0.84[GIH][hapmap];0.86[JPT][hapmap]
rs4339274	0.86[JPT][hapmap]
rs4560473	0.86[JPT][hapmap]
rs55762216	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55879786	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56155140	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56281640	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57265257	0.91[EUR][1000 genomes]
rs58408429	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6554401	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66790703	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6852182	0.82[EUR][1000 genomes]
rs6852997	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6853156	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72606404	0.91[EUR][1000 genomes]
rs72627508	0.91[EUR][1000 genomes]
rs72627509	0.88[EUR][1000 genomes]
rs73165969	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7658601	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7665147	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7687767	0.92[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs781656	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs781657	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs781658	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs781663	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9685436	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv3425352	chr4:57783591-57820951	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57777600-57803200	Weak transcription	NHDF-Ad	bronchial
2	chr4:57777600-57805600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:57777600-57806000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:57778400-57800200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:57778400-57800200	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:57778400-57801000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:57779000-57804600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:57779200-57799200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr4:57779800-57797600	Weak transcription	Fetal Brain Male	brain
10	chr4:57779800-57799600	Weak transcription	Right Atrium	heart
11	chr4:57780400-57800400	Strong transcription	Fetal Thymus	thymus
12	chr4:57780800-57808200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:57781000-57799600	Weak transcription	Psoas Muscle	Psoas
14	chr4:57781800-57801400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr4:57783000-57798400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:57783200-57801400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:57783800-57802000	Strong transcription	Dnd41	blood
18	chr4:57784200-57800000	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr4:57784800-57798200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr4:57785400-57800800	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr4:57786200-57800400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr4:57786400-57798200	Strong transcription	Fetal Stomach	stomach
23	chr4:57788800-57798200	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr4:57788800-57798200	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr4:57789800-57803200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr4:57790400-57798600	Strong transcription	Primary T cells from cord blood	blood
27	chr4:57790800-57799800	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr4:57793200-57798400	Strong transcription	Fetal Intestine Large	intestine
29	chr4:57793400-57798600	Strong transcription	Placenta	Placenta
30	chr4:57793400-57799600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr4:57793400-57800400	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr4:57793600-57798000	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr4:57793600-57800200	Strong transcription	Primary B cells from peripheral blood	blood
34	chr4:57793600-57842000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr4:57793600-57842000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr4:57794000-57798400	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr4:57794000-57800400	Strong transcription	Primary hematopoietic stem cells	blood
38	chr4:57794200-57798000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr4:57794400-57798200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr4:57794400-57798400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr4:57794600-57798200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr4:57794600-57798200	Strong transcription	Fetal Muscle Leg	muscle
43	chr4:57794600-57798400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr4:57794600-57798400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr4:57794600-57798400	Strong transcription	Fetal Muscle Trunk	muscle
46	chr4:57794600-57798600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr4:57794800-57802000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr4:57795000-57798600	Strong transcription	Osteobl	bone
49	chr4:57795000-57800000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr4:57795200-57800400	Strong transcription	HSMM	muscle

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