Variant report

Variant	rs73165969
Chromosome Location	chr4:57750725-57750726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10012574	0.82[ASN][1000 genomes]
rs10017024	0.86[ASN][1000 genomes]
rs10024730	0.86[ASN][1000 genomes]
rs10026372	0.85[ASN][1000 genomes]
rs12645070	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12648788	0.89[ASN][1000 genomes]
rs13150434	0.85[ASN][1000 genomes]
rs17081933	0.80[EUR][1000 genomes]
rs17081935	0.80[EUR][1000 genomes]
rs2002154	0.85[ASN][1000 genomes]
rs2170073	0.85[ASN][1000 genomes]
rs2170074	0.86[ASN][1000 genomes]
rs2227901	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3796529	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4339274	0.86[ASN][1000 genomes]
rs4371672	0.86[ASN][1000 genomes]
rs4412049	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4566710	0.86[ASN][1000 genomes]
rs4616820	0.86[ASN][1000 genomes]
rs55762216	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56155140	0.80[EUR][1000 genomes]
rs56162812	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56281640	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58408429	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58548607	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59708338	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59713092	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60796028	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62308104	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6554395	0.81[ASN][1000 genomes]
rs66790703	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67043033	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6852182	0.81[AMR][1000 genomes]
rs6852997	0.80[EUR][1000 genomes]
rs6853156	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs704637	0.88[ASN][1000 genomes]
rs73165958	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73165962	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73165963	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7658601	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7665147	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7670313	0.86[ASN][1000 genomes]
rs7687767	0.80[EUR][1000 genomes]
rs781656	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs781657	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs781658	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs781663	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs872779	0.81[ASN][1000 genomes]
rs9685436	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv523211	chr4:57749080-57761417	Enhancers Active TSS Flanking Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57741400-57750800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:57750600-57750800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:57750600-57750800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:57750600-57750800	Enhancers	Pancreas	Pancrea
5	chr4:57750600-57751000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:57750600-57751000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:57750600-57751000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:57750600-57751200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:57750600-57751200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr4:57750600-57751200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:57750600-57751200	Enhancers	Esophagus	oesophagus
12	chr4:57750600-57751400	Enhancers	Fetal Thymus	thymus

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