Variant report

Variant	rs704637
Chromosome Location	chr4:57713592-57713593
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12648788	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4412049	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs56162812	0.91[ASN][1000 genomes]
rs58548607	0.90[ASN][1000 genomes]
rs59708338	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59713092	0.91[ASN][1000 genomes]
rs60796028	0.90[ASN][1000 genomes]
rs62308104	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs67043033	0.91[ASN][1000 genomes]
rs73165958	0.91[ASN][1000 genomes]
rs73165962	0.91[ASN][1000 genomes]
rs73165963	0.91[ASN][1000 genomes]
rs73165969	0.88[ASN][1000 genomes]
rs781561	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57709800-57720000	Weak transcription	Right Atrium	heart
2	chr4:57713200-57713600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr4:57713200-57713600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:57713200-57713800	Enhancers	Adipose Nuclei	Adipose
5	chr4:57713400-57713600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
6	chr4:57713400-57713800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
7	chr4:57713400-57713800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
8	chr4:57713400-57713800	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links