Variant report

Variant	rs3796984
Chromosome Location	chr4:102986288-102986289
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10024352	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1395307	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17031932	1.00[AMR][1000 genomes]
rs17031987	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs17031989	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17031990	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2119212	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28424276	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3755864	1.00[AMR][1000 genomes]
rs3774928	0.82[CHB][hapmap];0.88[CHD][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs3774929	1.00[AMR][1000 genomes]
rs58136724	1.00[AMR][1000 genomes]
rs58194702	1.00[AMR][1000 genomes]
rs957458	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2757945	chr4:102662699-103008940	Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759269	chr4:102662699-103008940	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv879682	chr4:102859835-103088491	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv461596	chr4:102935902-103008712	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv594955	chr4:102935902-103008712	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv461597	chr4:102968082-103016878	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv594956	chr4:102968082-103016878	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102971600-102990400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:102977400-102987200	Strong transcription	Primary B cells from cord blood	blood
3	chr4:102980000-102998400	Strong transcription	Primary B cells from peripheral blood	blood
4	chr4:102984400-102999000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:102984800-102994400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr4:102985800-102986400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:102985800-102986600	Enhancers	NHEK	skin
8	chr4:102986000-102986400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:102986000-102986600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:102986000-102986800	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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