Variant report

Variant	rs58136724
Chromosome Location	chr4:103064877-103064878
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10024352	1.00[AMR][1000 genomes]
rs1395307	1.00[AMR][1000 genomes]
rs17031932	1.00[AMR][1000 genomes]
rs17031989	1.00[AMR][1000 genomes]
rs17031990	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2119212	1.00[AMR][1000 genomes]
rs28424276	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3755864	1.00[AMR][1000 genomes]
rs3774928	1.00[AMR][1000 genomes]
rs3774929	1.00[AMR][1000 genomes]
rs3796984	1.00[AMR][1000 genomes]
rs58194702	1.00[AMR][1000 genomes]
rs59323907	0.96[ASN][1000 genomes]
rs957458	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv879682	chr4:102859835-103088491	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103064200-103065200	Enhancers	HUVEC	blood vessel
2	chr4:103064600-103069600	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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