Variant report

Variant	rs3797212
Chromosome Location	chr5:35135476-35135477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35129006..35131934-chr5:35135179..35137405,2	MCF-7	breast:
2	chr5:35128476..35132194-chr5:35133007..35138405,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113494	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12109140	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12109986	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2062699	1.00[CEU][hapmap]
rs2228482	0.91[ASN][1000 genomes]
rs4142989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4640769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58497117	0.87[AFR][1000 genomes]
rs60139817	0.87[AFR][1000 genomes]
rs61523757	0.91[ASN][1000 genomes]
rs6878981	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs6897987	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs73078803	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73078804	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7732013	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7732593	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35128200-35136400	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr5:35130600-35136200	Weak transcription	NHEK	skin
3	chr5:35131800-35135800	Weak transcription	NHLF	lung
4	chr5:35132200-35135800	Weak transcription	NH-A	brain
5	chr5:35132200-35136000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:35132400-35136000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr5:35133200-35139200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:35133800-35136000	Weak transcription	Osteobl	bone
9	chr5:35133800-35136400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:35134000-35135600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:35134200-35135800	Enhancers	Fetal Intestine Large	intestine
12	chr5:35134600-35139200	Enhancers	NHDF-Ad	bronchial
13	chr5:35134800-35138000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:35134800-35139200	Enhancers	Placenta Amnion	Placenta Amnion
15	chr5:35135000-35135600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr5:35135200-35135800	Flanking Active TSS	Liver	Liver
17	chr5:35135400-35135600	Enhancers	Ovary	ovary
18	chr5:35135400-35135800	Genic enhancers	Placenta	Placenta
19	chr5:35135400-35136000	Enhancers	Pancreas	Pancrea
20	chr5:35135400-35136800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:35135400-35137000	Genic enhancers	Fetal Intestine Small	intestine
22	chr5:35135400-35137200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr5:35135400-35137600	Enhancers	HepG2	liver
24	chr5:35135400-35137800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr5:35135400-35139400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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