Variant report

Variant	rs4142989
Chromosome Location	chr5:35133961-35133962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr5:35133807-35133962	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35128476..35132194-chr5:35133007..35138405,8	MCF-7	breast:

Variant related genes	Relation type
PRLR	TF binding region
ENSG00000113494	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12109140	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12109986	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2062699	1.00[CEU][hapmap]
rs2228482	0.91[ASN][1000 genomes]
rs3797212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4640769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61523757	0.91[ASN][1000 genomes]
rs6878981	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs6897987	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs73078803	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73078804	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7732013	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7732593	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35128200-35136400	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr5:35130200-35135400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:35130600-35135400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:35130600-35135400	Weak transcription	Placenta	Placenta
5	chr5:35130600-35135400	Weak transcription	Ovary	ovary
6	chr5:35130600-35136200	Weak transcription	NHEK	skin
7	chr5:35130800-35134600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr5:35130800-35135000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr5:35131200-35134200	Weak transcription	Fetal Intestine Large	intestine
10	chr5:35131200-35135400	Weak transcription	Pancreas	Pancrea
11	chr5:35131800-35134200	Enhancers	HepG2	liver
12	chr5:35131800-35135800	Weak transcription	NHLF	lung
13	chr5:35132200-35135400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:35132200-35135800	Weak transcription	NH-A	brain
15	chr5:35132200-35136000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:35132400-35136000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr5:35133200-35139200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:35133400-35134000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:35133400-35135400	Enhancers	Fetal Intestine Small	intestine
20	chr5:35133600-35134800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr5:35133800-35134400	Flanking Active TSS	Liver	Liver
22	chr5:35133800-35134600	Weak transcription	NHDF-Ad	bronchial
23	chr5:35133800-35134800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr5:35133800-35135400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr5:35133800-35136000	Weak transcription	Osteobl	bone
26	chr5:35133800-35136400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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