Variant report

Variant	rs379844
Chromosome Location	chr6:13717201-13717202
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000225921	Chromatin interaction
ENSG00000252966	Chromatin interaction
ENSG00000010017	Chromatin interaction
ENSG00000261071	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10456703	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs169461	0.82[ASN][1000 genomes]
rs204224	0.82[ASN][1000 genomes]
rs204233	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs204234	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs204235	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs204236	0.85[ASN][1000 genomes]
rs204237	0.85[ASN][1000 genomes]
rs204238	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs204239	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs204240	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs204242	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs411094	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs438942	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs442458	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs453337	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59313939	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv883451	chr6:13704341-13728670	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
3	nsv883452	chr6:13704341-13733565	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13714000-13718000	Weak transcription	Dnd41	blood
2	chr6:13714000-13722800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:13714000-13723400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:13716000-13718400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr6:13716400-13717400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:13716600-13717400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:13716600-13722800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:13716800-13717400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:13716800-13718000	Weak transcription	HepG2	liver
10	chr6:13717000-13717400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:13717200-13717400	Enhancers	Esophagus	oesophagus
12	chr6:13717200-13719400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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