Variant report
| Variant | rs10456703 |
|---|---|
| Chromosome Location | chr6:13739490-13739491 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:13738311..13740748-chr6:13742371..13744717,2 | K562 | blood: | |
| 2 | chr6:13625404..13627006-chr6:13739192..13742116,2 | MCF-7 | breast: | |
| 3 | chr6:13733063..13736009-chr6:13738109..13740804,2 | MCF-7 | breast: | |
| 4 | chr6:13736668..13740748-chr6:13741569..13743871,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs169461 | 0.94[CHB][hapmap] |
| rs204233 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs204234 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs204235 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs204236 | 1.00[ASN][1000 genomes] |
| rs204237 | 1.00[ASN][1000 genomes] |
| rs204238 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs204239 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs204240 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs204242 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3752502 | 0.94[CHB][hapmap] |
| rs379844 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs411094 | 0.81[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs438942 | 0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs442458 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs453337 | 0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs59313939 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6927142 | 1.00[CEU][hapmap];0.88[CHB][hapmap] |
| rs9382329 | 0.94[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532021 | chr6:13232627-13805381 | Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 74 gene(s) | inside rSNPs | diseases |
| 2 | nsv1030774 | chr6:13736025-13783733 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv3388939 | chr6:13739323-13740321 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:13739000-13743200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
