Variant report

Variant	rs3798915
Chromosome Location	chr6:161495169-161495170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161413290..161415523-chr6:161493926..161495745,2	K562	blood:

Variant related genes	Relation type
ENSG00000272841	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1001808	0.84[ASN][1000 genomes]
rs12110787	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1980328	0.93[EUR][1000 genomes]
rs2314378	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3734461	0.97[EUR][1000 genomes]
rs3778219	0.80[ASN][1000 genomes]
rs594555	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs594602	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs630006	0.92[EUR][1000 genomes]
rs6455702	0.99[EUR][1000 genomes]
rs671335	0.94[AMR][1000 genomes]
rs6901173	0.92[EUR][1000 genomes]
rs6901968	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71565787	0.82[ASN][1000 genomes]
rs71565788	0.82[ASN][1000 genomes]
rs7746515	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9295134	0.97[EUR][1000 genomes]
rs9295138	0.99[EUR][1000 genomes]
rs9355327	0.92[EUR][1000 genomes]
rs9355870	1.00[EUR][1000 genomes]
rs9365246	0.99[EUR][1000 genomes]
rs9456620	0.99[EUR][1000 genomes]
rs9458102	0.89[EUR][1000 genomes]
rs9458114	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1030852	chr6:161477750-161589394	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161453600-161506600	Weak transcription	Small Intestine	intestine
2	chr6:161455200-161495800	Weak transcription	Fetal Brain Male	brain
3	chr6:161456400-161501600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:161459400-161508800	Weak transcription	Hela-S3	cervix
5	chr6:161459800-161496600	Weak transcription	Fetal Kidney	kidney
6	chr6:161459800-161502800	Weak transcription	HUVEC	blood vessel
7	chr6:161460000-161499200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:161460600-161495600	Weak transcription	HSMMtube	muscle
9	chr6:161462800-161497200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:161462800-161497800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:161462800-161508200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:161463600-161495600	Weak transcription	Pancreas	Pancrea
13	chr6:161463800-161499200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:161470600-161508000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:161471000-161503800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:161471400-161500600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:161473000-161495600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:161473200-161496200	Weak transcription	Psoas Muscle	Psoas
19	chr6:161477800-161495600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:161478400-161501400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr6:161479400-161497000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:161480200-161500800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:161482200-161496400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:161482800-161498200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:161482800-161499200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:161485800-161496600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr6:161486200-161496400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:161486200-161496600	Weak transcription	Left Ventricle	heart
29	chr6:161486200-161499200	Weak transcription	Gastric	stomach
30	chr6:161486200-161499200	Weak transcription	Spleen	Spleen
31	chr6:161486200-161519200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:161486400-161497200	Weak transcription	Aorta	Aorta
33	chr6:161487800-161501000	Weak transcription	NHEK	skin
34	chr6:161488000-161499200	Weak transcription	Colon Smooth Muscle	Colon
35	chr6:161488000-161501800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:161488200-161501600	Weak transcription	NHDF-Ad	bronchial
37	chr6:161488400-161495200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:161489400-161497200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:161489400-161501400	Weak transcription	Brain Anterior Caudate	brain
40	chr6:161489600-161496600	Weak transcription	Brain Angular Gyrus	brain
41	chr6:161489800-161495400	Weak transcription	Brain Hippocampus Middle	brain
42	chr6:161489800-161502600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:161490000-161508000	Weak transcription	Fetal Heart	heart
44	chr6:161490200-161495400	Weak transcription	Brain Germinal Matrix	brain
45	chr6:161490800-161496600	Weak transcription	Right Atrium	heart
46	chr6:161490800-161501800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr6:161490800-161501800	Weak transcription	Right Ventricle	heart
48	chr6:161490800-161508000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr6:161491000-161495800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:161491000-161496600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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