Variant report

Variant	rs671335
Chromosome Location	chr6:161415346-161415347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161413290..161415523-chr6:161493926..161495745,2	K562	blood:
2	chr6:161413545..161416445-chr6:161589800..161592180,2	K562	blood:
3	chr6:161414058..161416452-chr6:161484999..161486533,2	K562	blood:

Variant related genes	Relation type
ENSG00000085511	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12110787	0.86[EUR][1000 genomes]
rs12203648	0.93[ASN][1000 genomes]
rs35894036	0.84[ASN][1000 genomes]
rs3734461	0.80[EUR][1000 genomes]
rs3798915	0.94[AMR][1000 genomes]
rs4709485	0.94[ASN][1000 genomes]
rs588284	0.84[ASN][1000 genomes]
rs589238	0.87[ASN][1000 genomes]
rs590988	0.84[ASN][1000 genomes]
rs593184	0.90[ASN][1000 genomes]
rs594555	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs594602	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs619831	0.84[ASN][1000 genomes]
rs628075	0.83[ASN][1000 genomes]
rs629015	0.82[ASN][1000 genomes]
rs630006	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs630430	0.86[ASN][1000 genomes]
rs643706	0.87[ASN][1000 genomes]
rs644110	0.84[ASN][1000 genomes]
rs645406	0.84[ASN][1000 genomes]
rs655382	0.85[ASN][1000 genomes]
rs657616	0.86[ASN][1000 genomes]
rs674220	0.84[ASN][1000 genomes]
rs675538	0.84[ASN][1000 genomes]
rs685939	0.84[ASN][1000 genomes]
rs686392	0.84[ASN][1000 genomes]
rs686755	0.84[ASN][1000 genomes]
rs6901173	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6901968	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6913867	0.93[ASN][1000 genomes]
rs787784	0.84[ASN][1000 genomes]
rs796835	0.84[ASN][1000 genomes]
rs9295134	0.80[EUR][1000 genomes]
rs9347478	0.93[ASN][1000 genomes]
rs9355327	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161411800-161417800	Active TSS	GM12878-XiMat	blood
2	chr6:161413600-161416400	Weak transcription	Spleen	Spleen
3	chr6:161413800-161416400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:161413800-161416400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:161413800-161416400	Weak transcription	Esophagus	oesophagus
6	chr6:161413800-161416400	Weak transcription	Gastric	stomach
7	chr6:161413800-161416400	Weak transcription	Lung	lung
8	chr6:161413800-161416400	Weak transcription	Pancreas	Pancrea
9	chr6:161413800-161416400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:161413800-161416400	Weak transcription	Small Intestine	intestine
11	chr6:161413800-161432000	Weak transcription	Aorta	Aorta
12	chr6:161413800-161433000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:161414000-161415400	Enhancers	Primary B cells from peripheral blood	blood
14	chr6:161414000-161415600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr6:161414000-161415800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr6:161414000-161416000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:161414000-161416400	Weak transcription	Fetal Thymus	thymus
18	chr6:161414000-161416400	Weak transcription	Left Ventricle	heart
19	chr6:161414000-161416800	Weak transcription	Right Atrium	heart
20	chr6:161414000-161417200	Weak transcription	Brain Substantia Nigra	brain
21	chr6:161414000-161422400	Weak transcription	Fetal Muscle Leg	muscle
22	chr6:161414000-161430800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:161414000-161432000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:161414200-161415400	Weak transcription	Ovary	ovary
25	chr6:161414200-161415600	Enhancers	HepG2	liver
26	chr6:161414200-161415800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:161414200-161416200	Weak transcription	Fetal Intestine Large	intestine
28	chr6:161414200-161416200	Weak transcription	NHEK	skin
29	chr6:161414200-161416400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:161414200-161416400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:161414200-161416400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr6:161414200-161416400	Weak transcription	Fetal Intestine Small	intestine
33	chr6:161414200-161416400	Weak transcription	Right Ventricle	heart
34	chr6:161414200-161416400	Weak transcription	HSMMtube	muscle
35	chr6:161414200-161416600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr6:161414200-161416600	Weak transcription	HUVEC	blood vessel
37	chr6:161414200-161416800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr6:161414200-161416800	Weak transcription	Stomach Smooth Muscle	stomach
39	chr6:161414200-161416800	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr6:161414200-161416800	Weak transcription	NHLF	lung
41	chr6:161414200-161417000	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr6:161414200-161417000	Weak transcription	Brain Angular Gyrus	brain
43	chr6:161414200-161417200	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr6:161414200-161417200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:161414200-161417400	Weak transcription	Fetal Brain Female	brain
46	chr6:161414200-161417600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr6:161414200-161417800	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr6:161414200-161418000	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr6:161414200-161418000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr6:161414200-161419000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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