Variant report

Variant	rs3799286
Chromosome Location	chr6:73897278-73897279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1974371	0.89[EUR][1000 genomes]
rs6929988	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9293925	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9343016	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs9360647	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9360653	0.83[EUR][1000 genomes]
rs9446870	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1022151	chr6:73876795-73996828	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv538304	chr6:73876795-73996828	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73869000-73904200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:73884800-73903600	Weak transcription	Primary T cells from cord blood	blood
3	chr6:73887600-73903600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:73890800-73904200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:73890800-73904200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:73890800-73904400	Weak transcription	Aorta	Aorta
7	chr6:73891000-73897400	Weak transcription	Primary B cells from cord blood	blood
8	chr6:73891000-73900600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:73891000-73901000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:73891000-73903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:73891000-73909600	Weak transcription	HSMMtube	muscle
12	chr6:73891200-73904400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:73892000-73904800	Weak transcription	GM12878-XiMat	blood
14	chr6:73893200-73904400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:73893400-73904200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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