Variant report

Variant	rs9360653
Chromosome Location	chr6:73924930-73924931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10943080	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11756520	0.81[EUR][1000 genomes]
rs12173399	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12214787	0.85[CEU][hapmap];0.80[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12215253	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13212438	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13212697	0.81[AMR][1000 genomes]
rs1974371	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1974372	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1974373	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2350371	0.85[CEU][hapmap];0.80[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2350372	0.84[CEU][hapmap];0.84[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2350374	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2350375	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2350376	0.89[ASW][hapmap];0.82[CEU][hapmap];0.80[JPT][hapmap];0.85[LWK][hapmap];0.88[MEX][hapmap];0.97[MKK][hapmap];0.84[TSI][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2350377	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2350378	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2350379	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2350382	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2350384	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28674715	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2882400	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2882401	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2882402	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2882403	0.89[ASW][hapmap];0.82[CEU][hapmap];0.80[JPT][hapmap];0.83[LWK][hapmap];0.97[MKK][hapmap];0.82[TSI][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34641595	0.81[EUR][1000 genomes]
rs35052732	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3799286	0.83[EUR][1000 genomes]
rs3897515	0.89[ASW][hapmap];0.82[CEU][hapmap];0.85[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.84[TSI][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs41265513	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4301273	0.81[CEU][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4639295	0.89[ASW][hapmap];0.82[CEU][hapmap];0.80[JPT][hapmap];0.85[LWK][hapmap];0.88[MEX][hapmap];0.97[MKK][hapmap];0.84[TSI][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4640856	0.89[ASW][hapmap];0.82[CEU][hapmap];0.80[JPT][hapmap];0.85[LWK][hapmap];0.88[MEX][hapmap];0.97[MKK][hapmap];0.84[TSI][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4991400	0.89[ASW][hapmap];0.82[CEU][hapmap];0.80[JPT][hapmap];0.85[LWK][hapmap];0.88[MEX][hapmap];0.93[MKK][hapmap];0.84[TSI][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4991401	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4991402	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56316751	0.80[AMR][1000 genomes]
rs62411434	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6453653	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6453654	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6453655	0.89[ASW][hapmap];0.85[CEU][hapmap];0.80[JPT][hapmap];0.85[LWK][hapmap];0.88[MEX][hapmap];0.97[MKK][hapmap];0.89[TSI][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6929988	0.92[EUR][1000 genomes]
rs6935177	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6935193	0.85[CEU][hapmap];0.80[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7744556	0.82[EUR][1000 genomes]
rs7744755	0.83[EUR][1000 genomes]
rs7744796	0.82[EUR][1000 genomes]
rs7752003	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7755953	0.81[EUR][1000 genomes]
rs7770071	0.84[CEU][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7770723	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9293925	0.84[EUR][1000 genomes]
rs9343016	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9343018	0.82[EUR][1000 genomes]
rs9343020	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9351981	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9351982	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9360647	0.82[EUR][1000 genomes]
rs9360648	0.82[EUR][1000 genomes]
rs9360650	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9360651	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9360652	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9446870	0.96[CEU][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs947752	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9689607	0.85[CEU][hapmap];0.80[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1022151	chr6:73876795-73996828	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv538304	chr6:73876795-73996828	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	esv3436887	chr6:73918478-73933410	Enhancers ZNF genes & repeats Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3490217	chr6:73918493-73933458	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3490218	chr6:73918506-73933339	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3490220	chr6:73918506-73933339	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv3372384	chr6:73918524-73933409	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv1030079	chr6:73920050-73984084	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	esv3475136	chr6:73920540-73953198	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
11	esv3475137	chr6:73920702-73953146	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
12	nsv886157	chr6:73922561-73969722	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
13	esv3337260	chr6:73924581-73926529	Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73916200-73933800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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