Variant report

Variant	rs3799932
Chromosome Location	chr6:13575350-13575351
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:41)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:41 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:13484664..13490672-chr6:13572714..13577234,9	K562	blood:
2	chr6:13574638..13575386-chr7:117823501..117824120,2	Hela-S3	cervix:
3	chr6:13572897..13576165-chr6:13619318..13622919,5	K562	blood:
4	chr6:13573088..13576408-chr6:13709684..13713261,5	MCF-7	breast:
5	chr15:93352658..93353196-chr6:13574785..13575714,3	Hela-S3	cervix:
6	chr6:13358275..13360679-chr6:13575096..13577524,3	MCF-7	breast:
7	chr6:13572710..13576955-chr6:13610549..13618685,22	MCF-7	breast:
8	chr20:48808377..48808971-chr6:13575000..13575638,2	Hela-S3	cervix:
9	chr6:13326831..13329117-chr6:13574155..13576632,2	K562	blood:
10	chr6:13484642..13487748-chr6:13572714..13576594,3	K562	blood:
11	chr5:151151845..151152390-chr6:13574797..13575459,2	Hela-S3	cervix:
12	chr6:13573221..13576787-chr6:13710917..13713733,6	K562	blood:
13	chr6:13575265..13575767-chr9:136355658..136356179,2	Hela-S3	cervix:
14	chr6:13484393..13490113-chr6:13572102..13578017,14	MCF-7	breast:
15	chr15:44067639..44068140-chr6:13575131..13575783,2	Hela-S3	cervix:
16	chr6:13535769..13538764-chr6:13574933..13577249,3	MCF-7	breast:
17	chr6:13574818..13575379-chr7:25164041..25164955,2	Hela-S3	cervix:
18	chr6:13574892..13575841-chr6:13614462..13615340,2	K562	blood:
19	chr6:13573004..13578027-chr6:13613856..13617870,10	MCF-7	breast:
20	chr6:13572493..13576795-chr6:13677578..13681816,6	K562	blood:
21	chr6:13575144..13575646-chr6:13614473..13615342,2	Hela-S3	cervix:
22	chr17:75284124..75284998-chr6:13575066..13575572,2	Hela-S3	cervix:
23	chr6:13406137..13408577-chr6:13573927..13576170,2	MCF-7	breast:
24	chr6:13328242..13329088-chr6:13575005..13575601,2	Hela-S3	cervix:
25	chr6:13572923..13577086-chr6:13614342..13617597,6	K562	blood:
26	chr6:13573217..13575552-chr6:13711779..13713289,2	K562	blood:
27	chr6:13574510..13576795-chr6:13678124..13681559,3	K562	blood:
28	chr5:114879958..114880695-chr6:13574785..13575475,2	Hela-S3	cervix:
29	chr1:160312894..160313447-chr6:13574629..13575506,2	HCT-116	colon:
30	chr6:13574530..13575381-chr6:33588931..33589769,3	Hela-S3	cervix:
31	chr6:13287477..13291631-chr6:13573758..13576939,3	K562	blood:
32	chr6:13572897..13576165-chr6:13620913..13622919,3	K562	blood:
33	chr18:3623452..3623963-chr6:13575066..13575870,2	Hela-S3	cervix:
34	chr11:93474297..93475105-chr6:13574782..13575543,2	Hela-S3	cervix:
35	chr6:13274197..13275936-chr6:13573987..13576342,2	K562	blood:
36	chr6:13485388..13489511-chr6:13572660..13577514,13	MCF-7	breast:
37	chr6:13572865..13577994-chr6:13612366..13619020,17	K562	blood:
38	chr14:100704311..100704901-chr6:13574734..13575396,2	Hela-S3	cervix:
39	chr6:13280798..13285135-chr6:13573249..13575552,3	K562	blood:
40	chr6:13327393..13331113-chr6:13573725..13577168,7	MCF-7	breast:
41	chr14:67825632..67826631-chr6:13574719..13575473,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000128886	Chromatin interaction
ENSG00000010017	Chromatin interaction
ENSG00000145979	Chromatin interaction
ENSG00000100554	Chromatin interaction
ENSG00000177556	Chromatin interaction
ENSG00000162736	Chromatin interaction
ENSG00000122218	Chromatin interaction
ENSG00000128534	Chromatin interaction
ENSG00000185442	Chromatin interaction
ENSG00000145990	Chromatin interaction
ENSG00000172115	Chromatin interaction
ENSG00000182919	Chromatin interaction
ENSG00000225921	Chromatin interaction
ENSG00000187461	Chromatin interaction
ENSG00000237786	Chromatin interaction
ENSG00000268059	Chromatin interaction
ENSG00000145907	Chromatin interaction
ENSG00000261071	Chromatin interaction
ENSG00000100811	Chromatin interaction
ENSG00000096433	Chromatin interaction
ENSG00000215022	Chromatin interaction
ENSG00000252966	Chromatin interaction
ENSG00000258982	Chromatin interaction
ENSG00000145780	Chromatin interaction
ENSG00000166012	Chromatin interaction
ENSG00000272379	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11969611	1.00[AMR][1000 genomes]
rs57144554	1.00[AMR][1000 genomes]
rs59696155	1.00[AMR][1000 genomes]
rs6911323	1.00[AMR][1000 genomes]
rs7745293	1.00[AMR][1000 genomes]
rs7758239	1.00[AMR][1000 genomes]
rs9474300	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	esv3367329	chr6:13573423-13576971	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13573400-13575800	Active TSS	A549	lung
2	chr6:13573600-13575600	Active TSS	Right Ventricle	heart
3	chr6:13573800-13575600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr6:13573800-13575600	Active TSS	H9 Cell Line	embryonic stem cell
5	chr6:13573800-13575600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:13573800-13575600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:13573800-13575600	Active TSS	Brain Angular Gyrus	brain
8	chr6:13573800-13575600	Active TSS	Psoas Muscle	Psoas
9	chr6:13573800-13575800	Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr6:13573800-13575800	Active TSS	Brain Germinal Matrix	brain
11	chr6:13574000-13575400	Active TSS	Lung	lung
12	chr6:13574000-13575600	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr6:13574000-13575600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:13574000-13575600	Active TSS	Aorta	Aorta
15	chr6:13574000-13575600	Active TSS	Colon Smooth Muscle	Colon
16	chr6:13574000-13575600	Active TSS	Gastric	stomach
17	chr6:13574000-13575600	Active TSS	Placenta Amnion	Placenta Amnion
18	chr6:13574000-13575600	Transcr. at gene 5' and 3'	Right Atrium	heart
19	chr6:13574000-13575600	Active TSS	Sigmoid Colon	Sigmoid Colon
20	chr6:13574000-13575600	Active TSS	NHDF-Ad	bronchial
21	chr6:13574000-13575600	Active TSS	NHLF	lung
22	chr6:13574000-13575800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:13574000-13575800	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr6:13574000-13575800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:13574000-13575800	Active TSS	Muscle Satellite Cultured Cells	--
26	chr6:13574000-13575800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:13574000-13575800	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr6:13574000-13575800	Active TSS	Fetal Brain Female	brain
29	chr6:13574000-13576000	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr6:13574000-13576000	Active TSS	iPS-15b Cell Line	embryonic stem cell
31	chr6:13574000-13576000	Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr6:13574000-13576200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr6:13574200-13575400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:13574200-13575400	Active TSS	Primary T killer memory cells from peripheral blood	blood
35	chr6:13574200-13575400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:13574200-13575400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:13574200-13575400	Active TSS	Esophagus	oesophagus
38	chr6:13574200-13575400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
39	chr6:13574200-13575400	Active TSS	Fetal Brain Male	brain
40	chr6:13574200-13575400	Active TSS	Fetal Heart	heart
41	chr6:13574200-13575400	Active TSS	Fetal Intestine Small	intestine
42	chr6:13574200-13575400	Active TSS	Fetal Lung	lung
43	chr6:13574200-13575400	Active TSS	Fetal Muscle Leg	muscle
44	chr6:13574200-13575400	Active TSS	Pancreas	Pancrea
45	chr6:13574200-13575400	Active TSS	Monocytes-CD14+_RO01746	blood
46	chr6:13574200-13575600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:13574200-13575600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:13574200-13575600	Active TSS	HUES6 Cell Line	embryonic stem cell
49	chr6:13574200-13575600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr6:13574200-13575600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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