Variant report

Variant	rs3801099
Chromosome Location	chr7:13978648-13978649
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:13973434..13976076-chr7:13978028..13980321,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1029519	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12532909	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12536599	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12538878	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17167675	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17167676	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17167681	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28615403	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35638429	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3801096	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3801098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs725964	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73276816	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73276821	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9639168	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9639170	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9639171	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019873	chr7:13707148-14133367	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1020310	chr7:13839681-14015794	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538738	chr7:13839681-14015794	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv887698	chr7:13841798-14056075	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1020543	chr7:13851470-14021121	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv949467	chr7:13938464-14279074	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv887700	chr7:13948517-14042702	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv887701	chr7:13955324-13988170	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13933800-13983600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:13960200-13983600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:13960200-13987400	Weak transcription	K562	blood
4	chr7:13960200-13988200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:13960400-13985200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:13960400-13989000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:13960600-13979600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:13960800-13985400	Weak transcription	NH-A	brain
9	chr7:13961400-13985000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr7:13961800-13979000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:13962200-13979200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:13962800-13981400	Weak transcription	NHDF-Ad	bronchial
13	chr7:13963200-13985200	Weak transcription	Osteobl	bone
14	chr7:13963800-13979600	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr7:13966000-13979200	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:13967200-13979200	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:13969400-13981800	Weak transcription	Right Ventricle	heart
18	chr7:13969400-13985400	Weak transcription	Brain Hippocampus Middle	brain
19	chr7:13971400-13986400	Weak transcription	Lung	lung
20	chr7:13971400-13991600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr7:13971600-13989800	Weak transcription	Liver	Liver
22	chr7:13973400-13978800	Strong transcription	Fetal Lung	lung
23	chr7:13973400-13980400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr7:13973400-13989000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr7:13973400-13990000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr7:13973800-13985000	Weak transcription	NHLF	lung
27	chr7:13974200-13983600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:13974200-13986000	Weak transcription	Fetal Kidney	kidney
29	chr7:13974200-13987400	Weak transcription	Fetal Heart	heart
30	chr7:13975000-13985400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:13975200-13979000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr7:13975600-13981200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr7:13975600-13988200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr7:13975600-14003600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr7:13975600-14003600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr7:13975600-14013800	Weak transcription	Left Ventricle	heart
37	chr7:13976600-13978800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr7:13976600-13979200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr7:13976800-13979200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr7:13976800-13979600	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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