Variant report

Variant	rs3801147
Chromosome Location	chr7:139700915-139700916
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139700285..139702105-chr7:139703103..139705891,2	MCF-7	breast:
2	chr7:139476252..139479236-chr7:139700907..139703639,3	MCF-7	breast:
3	chr7:139475640..139476258-chr7:139700454..139701227,2	MCF-7	breast:
4	chr7:139700628..139703211-chr7:139704425..139707140,2	K562	blood:

Variant related genes	Relation type
ENSG00000059377	Chromatin interaction
ENSG00000064393	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11761051	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2010742	0.99[ASN][1000 genomes]
rs2267704	0.85[CHB][hapmap]
rs2267705	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs2267706	0.95[CHB][hapmap]
rs2284212	0.81[CHB][hapmap]
rs2362457	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3779130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs740204	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7789470	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7795996	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019001	chr7:139558216-139841268	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1029099	chr7:139558216-139869148	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv1828807	chr7:139675550-139727974	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv608476	chr7:139696248-139717200	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv608477	chr7:139697043-139718147	Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139672000-139704400	Weak transcription	Lung	lung
2	chr7:139681000-139717800	Weak transcription	Thymus	Thymus
3	chr7:139689600-139701800	Weak transcription	Fetal Kidney	kidney
4	chr7:139690800-139705600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:139691200-139706000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:139692000-139706400	Weak transcription	Spleen	Spleen
7	chr7:139693200-139729000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr7:139695000-139707400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr7:139695200-139721600	Weak transcription	Colonic Mucosa	Colon
10	chr7:139695400-139706000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:139695600-139701800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:139695600-139703800	Weak transcription	A549	lung
13	chr7:139695800-139701800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr7:139695800-139705400	Weak transcription	Fetal Heart	heart
15	chr7:139695800-139706400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr7:139695800-139709000	Weak transcription	Gastric	stomach
17	chr7:139696800-139701600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:139697200-139702000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr7:139699000-139707200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr7:139699200-139706400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:139699800-139703600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr7:139700400-139701200	Enhancers	HepG2	liver
23	chr7:139700800-139701600	Enhancers	Fetal Thymus	thymus
24	chr7:139700800-139702600	Strong transcription	Primary monocytes fromperipheralblood	blood

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