Variant report

Variant	rs740204
Chromosome Location	chr7:139707140-139707141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139190866..139192504-chr7:139706360..139708472,2	K562	blood:
2	chr7:139707115..139709190-chr7:139721974..139723889,2	MCF-7	breast:
3	chr7:139700628..139703211-chr7:139704425..139707140,2	K562	blood:
4	chr7:139328626..139331873-chr7:139705431..139708585,4	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11761051	0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs2010742	0.93[ASN][1000 genomes]
rs2267704	0.81[CHB][hapmap]
rs2267705	0.90[CHB][hapmap]
rs2267706	0.90[CHB][hapmap];0.84[CHD][hapmap]
rs2362457	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3779130	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3801147	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs3823715	0.82[EUR][1000 genomes]
rs7789470	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019001	chr7:139558216-139841268	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1029099	chr7:139558216-139869148	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv1828807	chr7:139675550-139727974	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv608476	chr7:139696248-139717200	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv608477	chr7:139697043-139718147	Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139681000-139717800	Weak transcription	Thymus	Thymus
2	chr7:139693200-139729000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr7:139695000-139707400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:139695200-139721600	Weak transcription	Colonic Mucosa	Colon
5	chr7:139695800-139709000	Weak transcription	Gastric	stomach
6	chr7:139699000-139707200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr7:139702200-139712000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:139702200-139721800	Weak transcription	Fetal Thymus	thymus
9	chr7:139702400-139722400	Weak transcription	Primary B cells from peripheral blood	blood
10	chr7:139702600-139742200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:139703200-139727800	Weak transcription	Right Atrium	heart
12	chr7:139704200-139710200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:139704200-139728800	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr7:139704800-139707400	Weak transcription	Lung	lung
15	chr7:139705400-139722000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr7:139706000-139710400	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr7:139706000-139727800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr7:139706200-139708600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:139706200-139710200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr7:139706400-139708000	Strong transcription	Spleen	Spleen
21	chr7:139706400-139709800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr7:139706400-139710600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr7:139706400-139718400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr7:139706800-139709000	Enhancers	Fetal Heart	heart

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