Variant report

Variant	rs3801361
Chromosome Location	chr7:78147430-78147431
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10246978	0.83[CEU][hapmap];0.88[CHB][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10261799	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1030015	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs34302036	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34938608	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3801360	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4730347	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs67497467	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6947977	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs7794537	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv607655	chr7:78134864-78148980	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78128800-78158400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:78138400-78161800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:78144200-78160000	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:78144400-78151600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:78144400-78156400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:78144400-78158200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:78144400-78158600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:78144600-78147800	Weak transcription	Brain Germinal Matrix	brain
9	chr7:78146000-78148000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:78146000-78149400	Weak transcription	Ovary	ovary
11	chr7:78146200-78153200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr7:78146200-78153600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr7:78146600-78156400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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