Variant report

Variant	rs6947977
Chromosome Location	chr7:78141660-78141661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10241051	0.83[CHD][hapmap];0.84[MEX][hapmap]
rs10246978	0.81[JPT][hapmap]
rs10249629	0.83[ASN][1000 genomes]
rs10261799	0.83[JPT][hapmap]
rs10268479	0.83[CHD][hapmap];0.85[MEX][hapmap]
rs1030012	0.86[CHB][hapmap];0.81[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs1030014	0.94[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34047739	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34938608	0.82[ASN][1000 genomes]
rs3801360	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs3801361	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs4730346	0.92[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs4730347	0.84[JPT][hapmap];0.86[YRI][hapmap]
rs55932199	0.97[ASN][1000 genomes]
rs67497467	0.83[ASN][1000 genomes]
rs73135410	0.91[ASN][1000 genomes]
rs7794537	0.87[CHB][hapmap];0.95[JPT][hapmap];0.82[MKK][hapmap];0.82[ASN][1000 genomes]
rs7804616	0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv607655	chr7:78134864-78148980	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78119600-78145600	Weak transcription	Ovary	ovary
2	chr7:78122600-78143800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:78126200-78143800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr7:78128200-78144000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:78128200-78145800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:78128400-78142600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:78128400-78144000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:78128400-78144000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:78128600-78142600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr7:78128600-78145800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:78128800-78158400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:78129000-78144000	Weak transcription	Pancreas	Pancrea
13	chr7:78131200-78144400	Weak transcription	Brain Angular Gyrus	brain
14	chr7:78138400-78161800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr7:78140400-78143800	Weak transcription	Brain Hippocampus Middle	brain
16	chr7:78140400-78143800	Weak transcription	Brain Substantia Nigra	brain
17	chr7:78140400-78144000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr7:78140400-78144000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr7:78140600-78142600	Weak transcription	Brain Anterior Caudate	brain
20	chr7:78140800-78144000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links