Variant report

Variant	rs3801874
Chromosome Location	chr7:26572863-26572864
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26570553..26573015-chr7:26573523..26576136,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KIAA0087-3	chr7:26572740-26576639	NR_022006

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10232690	0.82[ASN][1000 genomes]
rs10241879	0.83[ASN][1000 genomes]
rs10245341	0.84[ASN][1000 genomes]
rs10262030	0.82[ASN][1000 genomes]
rs10277111	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10278711	0.91[ASN][1000 genomes]
rs11768540	0.92[ASN][1000 genomes]
rs11982919	0.84[EUR][1000 genomes]
rs13232269	0.90[ASN][1000 genomes]
rs1990100	0.88[ASN][1000 genomes]
rs1990101	0.91[ASN][1000 genomes]
rs2158712	0.87[ASN][1000 genomes]
rs28687511	0.85[ASN][1000 genomes]
rs3757655	0.83[ASN][1000 genomes]
rs3757657	0.83[ASN][1000 genomes]
rs6942911	0.90[ASN][1000 genomes]
rs6943003	0.91[ASN][1000 genomes]
rs6976270	0.83[ASN][1000 genomes]
rs6979763	0.90[ASN][1000 genomes]
rs6980196	0.90[ASN][1000 genomes]
rs6980328	0.90[ASN][1000 genomes]
rs730955	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs740182	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7779755	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs995992	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs995993	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs995994	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26570800-26574400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:26571000-26578000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:26571200-26574200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr7:26572400-26573000	Enhancers	Adipose Nuclei	Adipose
5	chr7:26572400-26573000	Enhancers	Fetal Lung	lung
6	chr7:26572400-26576200	Enhancers	Fetal Kidney	kidney
7	chr7:26572600-26574200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr7:26572800-26574000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr7:26572800-26574200	Enhancers	Fetal Stomach	stomach

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