Variant report

Variant	rs7779755
Chromosome Location	chr7:26571838-26571839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26570553..26573015-chr7:26573523..26576136,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10215963	0.86[CHB][hapmap];0.82[CHD][hapmap];0.84[ASN][1000 genomes]
rs10277111	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10278711	0.84[ASN][1000 genomes]
rs11768540	0.85[ASN][1000 genomes]
rs11982919	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13232269	0.83[ASN][1000 genomes]
rs1990100	0.81[ASN][1000 genomes]
rs1990101	0.84[ASN][1000 genomes]
rs2158711	0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs3801874	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6942911	0.83[ASN][1000 genomes]
rs6943003	0.84[ASN][1000 genomes]
rs6943839	0.86[CHB][hapmap];0.82[CHD][hapmap];0.84[ASN][1000 genomes]
rs6953147	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs6979763	0.83[ASN][1000 genomes]
rs6980196	0.83[ASN][1000 genomes]
rs6980328	0.83[ASN][1000 genomes]
rs730954	0.87[CHB][hapmap];0.84[CHD][hapmap]
rs730955	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740182	0.88[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs995992	0.91[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs995993	0.88[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs995994	0.90[ASN][1000 genomes]
rs996550	0.86[CHB][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7779755	HOXA10	cis	lymphoblastoid	seeQTL
rs7779755	JAZF1	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26566400-26572200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:26570800-26574400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:26571000-26578000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:26571200-26572200	Enhancers	Fetal Kidney	kidney
5	chr7:26571200-26574200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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