Variant report

Variant	rs3803347
Chromosome Location	chr15:42042026-42042027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42035386..42037537-chr15:42041123..42043627,2	MCF-7	breast:
2	chr15:42041841..42044077-chr15:42045967..42047583,2	K562	blood:
3	chr15:42040960..42042477-chr15:42049684..42052512,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174197	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1210795	1.00[CHD][hapmap]
rs3816533	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049514	chr15:41958482-42081210	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1048655	chr15:41978391-42049360	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
4	nsv1036086	chr15:42004962-42091451	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1041861	chr15:42016097-42062287	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1054671	chr15:42016097-42098896	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv1044347	chr15:42023805-42049360	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1038894	chr15:42038152-42077452	Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41972400-42065200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:42003800-42056000	Weak transcription	Colonic Mucosa	Colon
3	chr15:42009800-42056800	Weak transcription	Fetal Heart	heart
4	chr15:42017400-42062600	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr15:42019400-42060600	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr15:42025000-42045800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:42025200-42065400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr15:42025800-42045000	Weak transcription	Stomach Mucosa	stomach
9	chr15:42029000-42052200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:42029000-42054200	Weak transcription	Small Intestine	intestine
11	chr15:42029200-42048400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:42030400-42046400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr15:42035400-42054400	Weak transcription	Pancreas	Pancrea
14	chr15:42035600-42046600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr15:42035800-42047600	Weak transcription	NHEK	skin
16	chr15:42035800-42058200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:42036000-42052800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:42036000-42058400	Weak transcription	Psoas Muscle	Psoas
19	chr15:42037000-42044200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:42038800-42051000	Strong transcription	Primary B cells from peripheral blood	blood
21	chr15:42039000-42044800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr15:42039000-42064400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:42039400-42043600	Strong transcription	Hela-S3	cervix
24	chr15:42039600-42042400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:42039600-42042600	Strong transcription	Skeletal Muscle Male	skeletal muscle
26	chr15:42039600-42042800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr15:42039600-42042800	Strong transcription	Fetal Muscle Leg	muscle
28	chr15:42039600-42042800	Strong transcription	GM12878-XiMat	blood
29	chr15:42039600-42043000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:42039600-42043000	Strong transcription	Fetal Brain Female	brain
31	chr15:42039600-42044000	Strong transcription	Fetal Intestine Large	intestine
32	chr15:42039600-42044200	Strong transcription	Fetal Muscle Trunk	muscle
33	chr15:42039600-42049000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:42039600-42062600	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr15:42039800-42042200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr15:42039800-42042800	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr15:42039800-42043000	Strong transcription	Primary B cells from cord blood	blood
38	chr15:42039800-42043200	Strong transcription	Fetal Thymus	thymus
39	chr15:42039800-42043400	Strong transcription	Primary hematopoietic stem cells	blood
40	chr15:42039800-42044200	Strong transcription	Primary T cells from cord blood	blood
41	chr15:42039800-42044200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr15:42039800-42044600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr15:42039800-42049200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr15:42040000-42042600	Strong transcription	Thymus	Thymus
45	chr15:42040000-42043200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:42040000-42043200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr15:42040000-42049600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr15:42040000-42061400	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr15:42040200-42042200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr15:42040200-42042400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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