Variant report

Variant	rs3803901
Chromosome Location	chr19:55699822-55699823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:55689515..55694212-chr19:55695255..55700390,7	K562	blood:

Variant related genes	Relation type
ENSG00000129990	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11671059	0.85[ASN][1000 genomes]
rs17458	0.81[ASN][1000 genomes]
rs2288420	0.81[ASN][1000 genomes]
rs2288523	0.82[ASN][1000 genomes]
rs34718815	0.80[ASN][1000 genomes]
rs3803902	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3803903	0.97[ASN][1000 genomes]
rs3803904	1.00[ASN][1000 genomes]
rs3826887	0.80[ASN][1000 genomes]
rs7247152	0.85[ASN][1000 genomes]
rs7247378	0.83[ASN][1000 genomes]
rs8103223	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816335	chr19:55683977-55901099	Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:55691200-55718200	Weak transcription	Right Atrium	heart
2	chr19:55691600-55718200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:55691800-55717600	Strong transcription	Fetal Intestine Small	intestine
4	chr19:55692000-55707800	Weak transcription	K562	blood
5	chr19:55692200-55710000	Weak transcription	Pancreas	Pancrea
6	chr19:55692600-55701200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr19:55692600-55717000	Strong transcription	Duodenum Mucosa	Duodenum
8	chr19:55693000-55702800	Weak transcription	Fetal Intestine Large	intestine
9	chr19:55693800-55700200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr19:55694600-55702200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr19:55696400-55702600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr19:55697200-55705000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr19:55697400-55702600	Weak transcription	Gastric	stomach
14	chr19:55697600-55705000	Weak transcription	HepG2	liver
15	chr19:55697600-55708200	Weak transcription	Stomach Mucosa	stomach
16	chr19:55698000-55705000	Weak transcription	Colonic Mucosa	Colon
17	chr19:55698200-55700000	Weak transcription	Spleen	Spleen
18	chr19:55698200-55700000	Weak transcription	Hela-S3	cervix
19	chr19:55698200-55702600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr19:55699000-55700800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr19:55699400-55700000	Enhancers	Primary hematopoietic stem cells	blood
22	chr19:55699400-55700000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr19:55699600-55701000	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr19:55699800-55700600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr19:55699800-55700800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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