Variant report

Variant	rs3803903
Chromosome Location	chr19:55699742-55699743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:55689515..55694212-chr19:55695255..55700390,7	K562	blood:

Variant related genes	Relation type
ENSG00000129990	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1128712	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11671059	0.82[ASN][1000 genomes]
rs12459688	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12459887	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12459917	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12459921	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12459930	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12460445	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12461148	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12461170	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12461195	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12461202	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12462211	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12462430	0.84[AMR][1000 genomes]
rs12463268	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12608558	0.81[AMR][1000 genomes]
rs17458	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17782295	0.84[AMR][1000 genomes]
rs2071572	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2071574	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2288420	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2288518	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2301278	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3745922	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3803901	0.97[ASN][1000 genomes]
rs3803902	0.97[ASN][1000 genomes]
rs3803904	0.97[ASN][1000 genomes]
rs3826887	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56666700	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58017412	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58085926	0.82[AMR][1000 genomes]
rs61570139	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61704307	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7247152	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7247378	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8101500	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9710458	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816335	chr19:55683977-55901099	Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:55691200-55718200	Weak transcription	Right Atrium	heart
2	chr19:55691600-55718200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:55691800-55717600	Strong transcription	Fetal Intestine Small	intestine
4	chr19:55692000-55707800	Weak transcription	K562	blood
5	chr19:55692200-55710000	Weak transcription	Pancreas	Pancrea
6	chr19:55692600-55701200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr19:55692600-55717000	Strong transcription	Duodenum Mucosa	Duodenum
8	chr19:55693000-55702800	Weak transcription	Fetal Intestine Large	intestine
9	chr19:55693800-55700200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr19:55694600-55702200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr19:55696400-55702600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr19:55697200-55705000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr19:55697400-55702600	Weak transcription	Gastric	stomach
14	chr19:55697600-55705000	Weak transcription	HepG2	liver
15	chr19:55697600-55708200	Weak transcription	Stomach Mucosa	stomach
16	chr19:55697800-55699800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr19:55698000-55705000	Weak transcription	Colonic Mucosa	Colon
18	chr19:55698200-55700000	Weak transcription	Spleen	Spleen
19	chr19:55698200-55700000	Weak transcription	Hela-S3	cervix
20	chr19:55698200-55702600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr19:55699000-55699800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr19:55699000-55700800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr19:55699400-55700000	Enhancers	Primary hematopoietic stem cells	blood
24	chr19:55699400-55700000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr19:55699600-55701000	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links