Variant report

Variant	rs3804326
Chromosome Location	chr6:24292185-24292186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10498720	1.00[MKK][hapmap]
rs12191697	1.00[AFR][1000 genomes]
rs12210975	1.00[AFR][1000 genomes]
rs1417414	1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs3761788	1.00[AFR][1000 genomes]
rs9358760	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9379648	1.00[CEU][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.85[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24284200-24294200	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24284600-24302800	Weak transcription	Pancreas	Pancrea
3	chr6:24288000-24292800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:24288200-24294800	Strong transcription	HepG2	liver
5	chr6:24288600-24296200	Weak transcription	Fetal Kidney	kidney
6	chr6:24292000-24292200	Enhancers	Fetal Intestine Large	intestine
7	chr6:24292000-24292200	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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