Variant report

Variant	rs9358760
Chromosome Location	chr6:24249893-24249894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1417414	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3804326	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9379648	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24241200-24250200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:24243800-24270000	Weak transcription	Fetal Kidney	kidney
4	chr6:24245400-24250000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:24245400-24250400	Weak transcription	Pancreas	Pancrea
6	chr6:24245800-24251000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:24245800-24251600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:24246000-24250400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:24249800-24250800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:24249800-24252600	Strong transcription	HepG2	liver
11	chr6:24249800-24253000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:24249800-24253200	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links