Variant report

Variant	rs3804435
Chromosome Location	chr5:36181617-36181618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36180379..36183249-chr5:36239593..36241776,2	K562	blood:

Variant related genes	Relation type
ENSG00000152620	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10072305	1.00[CEU][hapmap]
rs10076487	1.00[CEU][hapmap]
rs10223062	1.00[CEU][hapmap]
rs1035480	1.00[CEU][hapmap]
rs10805612	1.00[CEU][hapmap]
rs13175536	1.00[CEU][hapmap]
rs1345776	1.00[CEU][hapmap]
rs1363843	1.00[CEU][hapmap]
rs1363844	1.00[CEU][hapmap]
rs1423223	1.00[CEU][hapmap]
rs1423224	1.00[CEU][hapmap]
rs1423226	1.00[CEU][hapmap]
rs155544	1.00[CEU][hapmap]
rs1862543	1.00[CEU][hapmap]
rs1862544	1.00[CEU][hapmap]
rs2362980	1.00[CEU][hapmap]
rs33664	1.00[CEU][hapmap]
rs4869473	1.00[CEU][hapmap]
rs4869474	1.00[CEU][hapmap]
rs4869635	1.00[CEU][hapmap]
rs6451268	1.00[CEU][hapmap]
rs6451270	1.00[CEU][hapmap]
rs6869599	1.00[CEU][hapmap]
rs6874389	1.00[CEU][hapmap]
rs6881086	1.00[CEU][hapmap]
rs6884019	1.00[CEU][hapmap]
rs6886098	1.00[CEU][hapmap]
rs6892199	1.00[CEU][hapmap]
rs6897135	1.00[CEU][hapmap]
rs7705209	1.00[CEU][hapmap]
rs7705858	1.00[CEU][hapmap]
rs7705985	1.00[CEU][hapmap]
rs7716771	1.00[CEU][hapmap]
rs7722251	1.00[CEU][hapmap]
rs7724057	1.00[CEU][hapmap]
rs878607	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36153800-36184400	Strong transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:36154000-36184200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:36154200-36184400	Strong transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:36154200-36184400	Strong transcription	Fetal Thymus	thymus
5	chr5:36154400-36184400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:36154400-36210800	Weak transcription	Small Intestine	intestine
7	chr5:36158200-36183200	Strong transcription	Hela-S3	cervix
8	chr5:36158400-36182000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:36158400-36184400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr5:36158600-36184600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr5:36158600-36185600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:36161800-36184400	Strong transcription	Dnd41	blood
13	chr5:36162400-36183000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:36162400-36184400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:36163800-36200600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr5:36164800-36220800	Weak transcription	Gastric	stomach
17	chr5:36167200-36182800	Strong transcription	NH-A	brain
18	chr5:36169000-36182600	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr5:36169200-36181800	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr5:36169200-36193200	Weak transcription	Pancreas	Pancrea
21	chr5:36169400-36181800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr5:36169600-36182400	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr5:36169600-36202400	Weak transcription	Fetal Heart	heart
24	chr5:36170200-36182400	Strong transcription	HUVEC	blood vessel
25	chr5:36171800-36220600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr5:36172000-36185200	Weak transcription	Esophagus	oesophagus
27	chr5:36172000-36229200	Weak transcription	Colonic Mucosa	Colon
28	chr5:36172400-36189400	Weak transcription	Fetal Intestine Small	intestine
29	chr5:36172400-36189600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr5:36174200-36195200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr5:36174400-36190800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr5:36175000-36189600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr5:36175000-36191200	Weak transcription	Aorta	Aorta
34	chr5:36175000-36191600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr5:36175200-36184400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr5:36175200-36189600	Weak transcription	Spleen	Spleen
37	chr5:36175200-36202400	Weak transcription	Right Ventricle	heart
38	chr5:36175200-36220800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr5:36175400-36189600	Weak transcription	Lung	lung
40	chr5:36175400-36190600	Weak transcription	Ovary	ovary
41	chr5:36175600-36195800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr5:36175600-36222400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr5:36176600-36182600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr5:36176600-36184400	Strong transcription	HSMM	muscle
45	chr5:36176800-36182200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr5:36176800-36182200	Strong transcription	Primary hematopoietic stem cells	blood
47	chr5:36176800-36182200	Strong transcription	K562	blood
48	chr5:36176800-36182200	Strong transcription	NHDF-Ad	bronchial
49	chr5:36176800-36183200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr5:36176800-36183200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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