Variant report

Variant	rs6451268
Chromosome Location	chr5:36255364-36255365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36254103..36256632-chr5:36256912..36259003,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10072305	1.00[CEU][hapmap]
rs10076487	1.00[CEU][hapmap]
rs10080095	0.81[EUR][1000 genomes]
rs10214173	0.81[EUR][1000 genomes]
rs10223062	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1035480	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10805611	0.81[EUR][1000 genomes]
rs10805612	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11746720	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11750947	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13155313	0.90[EUR][1000 genomes]
rs13175536	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13360059	0.81[EUR][1000 genomes]
rs1345776	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1363843	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1363844	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1423223	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1423224	1.00[CEU][hapmap]
rs1423226	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs155544	1.00[CEU][hapmap]
rs1862543	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1862544	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2362980	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs33664	1.00[CEU][hapmap]
rs34946590	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3804435	1.00[CEU][hapmap]
rs4869473	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4869474	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4869634	0.81[EUR][1000 genomes]
rs4869635	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6451270	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6869599	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6874389	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6881086	1.00[CEU][hapmap]
rs6884019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6886098	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6892199	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6897135	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7705209	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7705858	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7705985	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7716771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7722251	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7724057	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs878607	1.00[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv881598	chr5:36248752-36382802	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6451268	RANBP3L	cis	brain	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36251800-36274400	Weak transcription	Brain Anterior Caudate	brain
2	chr5:36254000-36274400	Weak transcription	Aorta	Aorta
3	chr5:36255200-36260200	Strong transcription	Liver	Liver

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