Variant report

Variant	rs3805298
Chromosome Location	chr4:95436626-95436627
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95429157..95431887-chr4:95434786..95438000,3	K562	blood:
2	chr4:95405697..95407319-chr4:95434708..95437495,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10033876	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs10440326	1.00[ASN][1000 genomes]
rs10516951	1.00[CEU][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes]
rs10516953	1.00[LWK][hapmap]
rs12331549	0.83[AMR][1000 genomes]
rs17021720	1.00[JPT][hapmap]
rs17021822	1.00[AMR][1000 genomes]
rs28491414	0.90[ASN][1000 genomes]
rs28595335	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62316379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62319391	1.00[AMR][1000 genomes]
rs62321990	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9996560	0.92[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95375000-95440200	Weak transcription	Primary T cells from cord blood	blood
2	chr4:95400800-95440000	Weak transcription	Lung	lung
3	chr4:95415400-95440200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr4:95421200-95440000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:95421600-95440000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:95422400-95482800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:95429400-95436800	Weak transcription	HSMM	muscle
8	chr4:95429400-95437200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:95429600-95436800	Weak transcription	NHEK	skin
10	chr4:95429800-95437400	Weak transcription	Aorta	Aorta
11	chr4:95429800-95437600	Weak transcription	Psoas Muscle	Psoas
12	chr4:95429800-95440000	Weak transcription	Esophagus	oesophagus
13	chr4:95429800-95440000	Weak transcription	Ovary	ovary
14	chr4:95430000-95437600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:95430000-95456200	Weak transcription	Small Intestine	intestine
16	chr4:95430200-95437400	Weak transcription	K562	blood
17	chr4:95430400-95437000	Weak transcription	NHDF-Ad	bronchial
18	chr4:95430400-95437200	Weak transcription	HMEC	breast
19	chr4:95430600-95440000	Weak transcription	Right Ventricle	heart
20	chr4:95430600-95444000	Weak transcription	HSMMtube	muscle
21	chr4:95431200-95436800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:95431200-95440000	Weak transcription	Pancreas	Pancrea
23	chr4:95431400-95437200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:95431400-95438600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr4:95431800-95437200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr4:95432000-95437000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr4:95432000-95437600	Weak transcription	Left Ventricle	heart
28	chr4:95433000-95437400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:95435600-95440000	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr4:95435800-95436800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr4:95435800-95437000	Enhancers	Osteobl	bone
32	chr4:95435800-95440200	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr4:95435800-95444600	Enhancers	Fetal Heart	heart
34	chr4:95436200-95436800	Enhancers	Fetal Intestine Small	intestine
35	chr4:95436200-95437000	Enhancers	A549	lung
36	chr4:95436200-95437600	Enhancers	Placenta Amnion	Placenta Amnion
37	chr4:95436200-95438400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr4:95436200-95439200	Enhancers	NH-A	brain
39	chr4:95436200-95439400	Enhancers	Muscle Satellite Cultured Cells	--
40	chr4:95436200-95439400	Enhancers	Rectal Smooth Muscle	rectum
41	chr4:95436200-95441600	Enhancers	Liver	Liver
42	chr4:95436400-95438000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr4:95436400-95438000	Enhancers	Fetal Intestine Large	intestine
44	chr4:95436400-95440000	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr4:95436400-95447200	Enhancers	Colon Smooth Muscle	Colon
46	chr4:95436600-95436800	Enhancers	Pancreatic Islets	Pancreatic Islet
47	chr4:95436600-95437400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr4:95436600-95437800	Genic enhancers	HUVEC	blood vessel
49	chr4:95436600-95439000	Enhancers	HepG2	liver
50	chr4:95436600-95439600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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